chr6 : 8,278,531 8,278,813
282 bp 65 TFs 0 linked genes
This 282 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:8,273,531 – 8,283,813
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 4 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 83 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 84 bp overlap
ChIP VCaP GSE148358.AR.VCaP 59 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 61 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 242 bp overlap
BRD4 4 datasets
ChIP BE2C GSE80151.BRD4.BE2C 251 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 232 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 251 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 195 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 272 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 146 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 236 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 199 bp overlap
FOXA1 7 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 116 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 204 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 185 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 175 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 102 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 98 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 76 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 259 bp overlap
ChIP DE DE-FOXA2-2 254 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 116 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 222 bp overlap
GATA2 6 datasets
ChIP SH-SY5Y ENCFF485YIB 126 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 241 bp overlap
ChIP SK-N-SH ENCFF764OZD 121 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 205 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 57 bp overlap
ChIP VCaP_JQ1 GSE125236.GATA2.VCaP_JQ1 118 bp overlap
GATA3 6 datasets
ChIP BE2C GSE65664.GATA3.BE2C 136 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 120 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 98 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 190 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 94 bp overlap
ChIP SK-N-SH ENCFF040SSB 198 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 180 bp overlap
ChIP DE DE-GATA4-2 249 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 122 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 158 bp overlap
ChIP DE DE-GATA6-2 218 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 203 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 89 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GLIS3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 73 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 252 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 73 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 250 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 139 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 240 bp overlap
KDM1A 2 datasets
ChIP K-562 GSE117944.KDM1A.K-562 272 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 231 bp overlap
KLF5 1 dataset
ChIP HEK293_D418N GSE88976.KLF5.HEK293_D418N 150 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 117 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 282 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 244 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 282 bp overlap
MYCN 10 datasets
ChIP BE2C GSE80151.MYCN.BE2C 247 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 210 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 282 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 196 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 174 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 282 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 203 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 195 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 247 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 193 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 115 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 86 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 198 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 149 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 282 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 108 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
PPARA 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 103 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 234 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 198 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 225 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 282 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 83 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 217 bp overlap
SMARCE1 1 dataset
ChIP HMLE-Twist-ER_125nM_4OHT GSE96933.SMARCE1.HMLE-Twist-ER_125nM_4OHT 132 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 97 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 234 bp overlap
SOX2 2 datasets
ChIP RENVM GSE49404.SOX2.RENVM 187 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 154 bp overlap
SUZ12 1 dataset
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 260 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 96 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 139 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 224 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 224 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 183 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 144 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 282 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 282 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
YY1 2 datasets
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 198 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 210 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap