chr5 : 142,684,523 142,685,012
489 bp 76 TFs 1 linked gene
This 489 bp open chromatin element is linked to FGF1 and is bound by 76 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
FGF1 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:142,679,523 – 142,690,012
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 278 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 489 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 434 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 489 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 489 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 319 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 251 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 191 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 176 bp overlap
BRD4 2 datasets
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 76 bp overlap
ChIP hESC GSE33281.BRD4.hESC 64 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 136 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 63 bp overlap
CDK9 1 dataset
ChIP A-375_DMSO GSE57431.CDK9.A-375_DMSO 232 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 198 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 339 bp overlap
CTBP2 3 datasets
ChIP H1 ENCFF329MAX 369 bp overlap
ChIP H1 ENCFF329MAX 489 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 264 bp overlap
CTCF 19 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 143 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 102 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 466 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 266 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 476 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF478RRB 431 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF478RRB 222 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF514PNC 384 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF595WAL 486 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF641PIN 348 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF641PIN 147 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 459 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 445 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 447 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 358 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 431 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 488 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 422 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 389 bp overlap
DPF2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 380 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 468 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 489 bp overlap
EGR1 2 datasets
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 156 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 134 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 295 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 210 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 454 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 203 bp overlap
FOXA1 6 datasets
ChIP HEK293_v5_TFS GSE123618.FOXA1.HEK293_v5_TFS 124 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 60 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 155 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 266 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 69 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 103 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 181 bp overlap
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 268 bp overlap
ChIP DE DE-FOXA2-1 431 bp overlap
ChIP DE DE-FOXA2-2 421 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 100 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 100 bp overlap
ChIP H9 GSE31006.FOXP1.H9 215 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 332 bp overlap
ChIP DE DE-GATA4-2 310 bp overlap
ChIP foregut GSE117136.GATA4.foregut 118 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 218 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 436 bp overlap
ChIP foregut GSE117136.GATA6.foregut 53 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 118 bp overlap
IRF1 1 dataset
ChIP HAEC_IL1b_4h GSE89970.IRF1.HAEC_IL1b_4h 178 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 333 bp overlap
JARID2 1 dataset
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 242 bp overlap
JUN 2 datasets
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 149 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 317 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 397 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 188 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 112 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 213 bp overlap
KMT2C 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 402 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4-T910M 214 bp overlap
KMT2D 3 datasets
ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 269 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 489 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4-T910M 381 bp overlap
MAFK 2 datasets
ChIP H1 ENCFF854XWE 285 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 154 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 233 bp overlap
MITF 2 datasets
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 225 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 244 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 416 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 229 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 390 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 264 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 228 bp overlap
ChIP hESC GSE18292.NANOG.hESC 101 bp overlap
NKX2-1 2 datasets
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 107 bp overlap
ChIP NCI-H2087 GSE39998.NKX2-1.NCI-H2087 171 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 257 bp overlap
OLIG2 3 datasets
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 417 bp overlap
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 360 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 489 bp overlap
POLR2A 2 datasets
ChIP gastroesophageal sphincter ENCFF070PCA 341 bp overlap
ChIP spleen ENCFF446ZGT 472 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 195 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 355 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 127 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 85 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 199 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 169 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 235 bp overlap
RELA 40 datasets
ChIP HAEC GSE89970.RELA.HAEC 130 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 485 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 489 bp overlap
ChIP HUVEC-C_Scr GSE87552.RELA.HUVEC-C_Scr 157 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 393 bp overlap
ChIP HUVEC-C_TNF GSE43070.RELA.HUVEC-C_TNF 210 bp overlap
ChIP HUVEC-C_TNF-30min GSE121890.RELA.HUVEC-C_TNF-30min 179 bp overlap
ChIP HUVEC-C_TNF-60min GSE121890.RELA.HUVEC-C_TNF-60min 352 bp overlap
ChIP HUVEC-C_TNF_30M GSE34500.RELA.HUVEC-C_TNF_30M 179 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 337 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 301 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 346 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 345 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 379 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 489 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 453 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 410 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 450 bp overlap
ChIP aortic-endothelial-cell_IL1B_D24 GSE139377.RELA.aortic-endothelial-cell_IL1B_D24 264 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 489 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 301 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 489 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 361 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 471 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 398 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 433 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 278 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 443 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 406 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 489 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 418 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 489 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 423 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 307 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 418 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 367 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 362 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 416 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 413 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 378 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 459 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 390 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 271 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 309 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 289 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 489 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 202 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 401 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 342 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 489 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 489 bp overlap
SMAD3 4 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 136 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 127 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 166 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 152 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 140 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 230 bp overlap
SMARCA4 5 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 78 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 489 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 186 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 489 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 489 bp overlap
SMARCC1 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 489 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 489 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 489 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 489 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 427 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 489 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 474 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 237 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 284 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 441 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 489 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 489 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 210 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 150 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 274 bp overlap
TP53 1 dataset
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 242 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 353 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 283 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 321 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 250 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 159 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 350 bp overlap