chr5 : 57,070,146 57,071,232
1,086 bp 102 TFs 4 linked genes
This 1.1 kb open chromatin element is linked to 4 target genes and is bound by 102 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
GPBP1 103.3 kb Distal Multiome
MIER3 118.6 kb Distal Multiome
SETD9 161.2 kb Distal Multiome
MAP3K1 255.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:57,065,146 – 57,076,232
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
102 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 117 bp overlap
E2F6 2 datasets
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
Motif DE_72h DE_72h-E2F6_MA0471.3 8 bp overlap
EHF 1 dataset
Motif DE_48h DE_48h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
EOMES 4 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 325 bp overlap
ESRRA 2 datasets
Motif DE_60h DE_60h-ESRRA_MA0592.4 9 bp overlap
Motif DE_72h DE_72h-ESRRA_MA0592.4 9 bp overlap
ETV1 1 dataset
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
Elf5 1 dataset
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
FEZF2 5 datasets
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FIGLA 3 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 214 bp overlap
ChIP DE DE-FOXA2-1 770 bp overlap
ChIP DE DE-FOXA2-2 742 bp overlap
GABPA 1 dataset
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
GATA1 1 dataset
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 125 bp overlap
GATA2 1 dataset
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 1086 bp overlap
ChIP DE DE-GATA4-2 1086 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 190 bp overlap
ChIP foregut GSE117136.GATA4.foregut 282 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 809 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 8 datasets
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 187 bp overlap
ChIP DE DE-GATA6-1 1086 bp overlap
ChIP DE DE-GATA6-2 1086 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 883 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 776 bp overlap
ChIP foregut GSE117136.GATA6.foregut 333 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 532 bp overlap
Gata3 1 dataset
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Gfi1B 3 datasets
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
HOXB4 1 dataset
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
HSF1 2 datasets
Motif DE_48h DE_48h-HSF1_MA0486.2 13 bp overlap
ChIP SK-BR-3 GSE38901.HSF1.SK-BR-3 187 bp overlap
HSF2 1 dataset
Motif DE_48h DE_48h-HSF2_MA0770.1 13 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 343 bp overlap
ChIP K562 ENCFF348IBL 505 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
IRF3 3 datasets
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap
IRF5 1 dataset
Motif DE_48h DE_48h-IRF5_MA1420.1 14 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 465 bp overlap
MGA 3 datasets
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
Mafb 3 datasets
Motif DE_48h DE_48h-Mafb_MA0117.3 11 bp overlap
Motif DE_60h DE_60h-Mafb_MA0117.3 11 bp overlap
Motif DE_72h DE_72h-Mafb_MA0117.3 11 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NFATC3 2 datasets
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_48h DE_48h-NFATC4_MA1525.3 9 bp overlap
NR2C1 2 datasets
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
Motif DE_72h DE_72h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
Motif DE_72h DE_72h-NR2C2_MA1536.2 6 bp overlap
Nfat5 2 datasets
Motif DE_48h DE_48h-Nfat5_MA0606.3 8 bp overlap
Motif DE_48h DE_48h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 2 datasets
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Nfe2l2 1 dataset
Motif DE_48h DE_48h-Nfe2l2_MA0150.3 11 bp overlap
Nkx2-1 2 datasets
Motif DE_60h DE_60h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_72h DE_72h-Nkx2-1_MA1994.2 7 bp overlap
Nr1H2 2 datasets
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_72h DE_72h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_72h DE_72h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_72h DE_72h-Nr1h3_MA2337.1 6 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_72h DE_72h-Nr1h3Rxra_MA0494.2 16 bp overlap
PKNOX2 3 datasets
Motif DE_48h DE_48h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_60h DE_60h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_72h DE_72h-PKNOX2_MA0783.1 12 bp overlap
Plagl1 2 datasets
Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
Ptf1A 3 datasets
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
RARA 2 datasets
Motif DE_60h DE_60h-RARA_MA0729.1 18 bp overlap
Motif DE_72h DE_72h-RARA_MA0729.1 18 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
REST 3 datasets
Motif DE_48h DE_48h-REST_MA0138.3 20 bp overlap
Motif DE_60h DE_60h-REST_MA0138.3 20 bp overlap
Motif DE_72h DE_72h-REST_MA0138.3 20 bp overlap
RORA 4 datasets
Motif DE_60h DE_60h-RORA_MA0071.1 10 bp overlap
Motif DE_60h DE_60h-RORA_MA0072.2 11 bp overlap
Motif DE_72h DE_72h-RORA_MA0071.1 10 bp overlap
Motif DE_72h DE_72h-RORA_MA0072.2 11 bp overlap
Rarg 2 datasets
Motif DE_60h DE_60h-Rarg_MA0860.1 17 bp overlap
Motif DE_72h DE_72h-Rarg_MA0860.1 17 bp overlap
SMAD2_3 4 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 205 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 738 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 242 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 569 bp overlap
SNAI2 3 datasets
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
Motif DE_60h DE_60h-SNAI2_MA0745.3 8 bp overlap
Motif DE_72h DE_72h-SNAI2_MA0745.3 8 bp overlap
SNAI3 3 datasets
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
Motif DE_60h DE_60h-SNAI3_MA1559.2 9 bp overlap
Motif DE_72h DE_72h-SNAI3_MA1559.2 9 bp overlap
SOX10 5 datasets
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 890 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 774 bp overlap
SOX4 5 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX6 1 dataset
ChIP K-562 ENCSR788RSW.SOX6.K-562 258 bp overlap
SP5 3 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
STAT1::STAT2 4 datasets
Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_48h DE_48h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_60h DE_60h-STAT1STAT2_MA0517.2 13 bp overlap
Motif DE_72h DE_72h-STAT1STAT2_MA0517.2 13 bp overlap
Smad4 3 datasets
Motif DE_48h DE_48h-Smad4_MA1153.2 7 bp overlap
Motif DE_60h DE_60h-Smad4_MA1153.2 7 bp overlap
Motif DE_72h DE_72h-Smad4_MA1153.2 7 bp overlap
Sox5 2 datasets
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 3 datasets
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
TBR1 3 datasets
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 3 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 3 datasets
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX18 5 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TBX2 3 datasets
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
Motif DE_72h DE_72h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
Motif DE_72h DE_72h-TBX20_MA0689.1 11 bp overlap
TBX21 3 datasets
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX3 3 datasets
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
Motif DE_72h DE_72h-TBX3_MA1566.3 9 bp overlap
TBX4 3 datasets
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TBX5 3 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TGIF1 3 datasets
Motif DE_48h DE_48h-TGIF1_MA0796.1 12 bp overlap
Motif DE_60h DE_60h-TGIF1_MA0796.1 12 bp overlap
Motif DE_72h DE_72h-TGIF1_MA0796.1 12 bp overlap
TGIF2 3 datasets
Motif DE_48h DE_48h-TGIF2_MA0797.1 12 bp overlap
Motif DE_60h DE_60h-TGIF2_MA0797.1 12 bp overlap
Motif DE_72h DE_72h-TGIF2_MA0797.1 12 bp overlap
THRA 2 datasets
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
Motif DE_72h DE_72h-THRA_MA1969.2 18 bp overlap
THRB 2 datasets
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
Motif DE_72h DE_72h-THRB_MA1576.2 18 bp overlap
TRPS1 1 dataset
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Tbx6 5 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
Motif DE_72h DE_72h-Tbx6_MA1567.3 9 bp overlap
ZBTB18 3 datasets
Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 3 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF135 5 datasets
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
Motif DE_60h DE_60h-ZNF135_MA1587.1 14 bp overlap
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
Motif DE_72h DE_72h-ZNF135_MA1587.1 14 bp overlap
ZNF175 1 dataset
Motif DE_48h DE_48h-ZNF175_MA2332.1 9 bp overlap
ZNF211 2 datasets
ChIP HEK293 ENCFF839HGM 146 bp overlap
ChIP HEK293 ENCSR365DQH.ZNF211.HEK293 353 bp overlap
ZNF213 2 datasets
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap
ZNF460 3 datasets
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
Motif DE_72h DE_72h-ZNF460_MA1596.1 16 bp overlap
ZNF558 1 dataset
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
ZNF652 1 dataset
Motif DE_48h DE_48h-ZNF652_MA1657.2 9 bp overlap
ZNF684 1 dataset
Motif DE_48h DE_48h-ZNF684_MA1600.2 14 bp overlap
ZNF708 2 datasets
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap
ZNF75A 2 datasets
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_72h DE_72h-ZNF75A_MA2097.1 12 bp overlap
ZNF75D 1 dataset
Motif DE_48h DE_48h-ZNF75D_MA1601.2 12 bp overlap
ZNF770 3 datasets
Motif DE_48h DE_48h-ZNF770_MA2099.1 8 bp overlap
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap
Motif DE_72h DE_72h-ZNF770_MA2099.1 8 bp overlap
ZNF85 3 datasets
Motif DE_48h DE_48h-ZNF85_MA1720.2 12 bp overlap
Motif DE_60h DE_60h-ZNF85_MA1720.2 12 bp overlap
Motif DE_72h DE_72h-ZNF85_MA1720.2 12 bp overlap
Znf423 3 datasets
Motif DE_48h DE_48h-Znf423_MA0116.1 15 bp overlap
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap
Motif DE_72h DE_72h-Znf423_MA0116.1 15 bp overlap