chr5 : 34,022,289 – 34,022,585
296 bp 69 TFs 1 linked gene
This 296 bp open chromatin element is linked to C1QTNF3 and is bound by 69 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
C1QTNF3 6.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:34,017,289 – 34,027,585
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 190 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 296 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 135 bp overlap
BATF3 2 datasets
ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 82 bp overlap
ChIP ST-1_BirA GSE94732.BATF3.ST-1_BirA 152 bp overlap
BRD4 9 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 96 bp overlap
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 143 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 172 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 276 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 296 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 187 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 296 bp overlap
ChIP MOLT-4_DMSO GSE79288.BRD4.MOLT-4_DMSO 215 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 128 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 136 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK7 2 datasets
ChIP Jurkat GSE83777.CDK7.Jurkat 206 bp overlap
ChIP Jurkat_DMSO GSE60027.CDK7.Jurkat_DMSO 101 bp overlap
CREBBP 3 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 141 bp overlap
ChIP PC-3 GSE147455.CREBBP.PC-3 67 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 262 bp overlap
CTCF 1 dataset
ChIP DND41 ENCSR000AQU.CTCF.DND41 203 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 260 bp overlap
EGR1 1 dataset
ChIP macrophage_D3 GSE136216.EGR1.macrophage_D3 208 bp overlap
ELF1 2 datasets
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 134 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 100 bp overlap
EP300 3 datasets
ChIP AML GSE131939.EP300.AML 85 bp overlap
ChIP AML_shaml1-eto GSE131939.EP300.AML_shaml1-eto 77 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 179 bp overlap
ERG 4 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 296 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 129 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 139 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 103 bp overlap
ETS1 5 datasets
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 238 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 281 bp overlap
ChIP GM12878 ENCFF019FEB 151 bp overlap
ChIP SCC-25 GSE109884.ETS1.SCC-25 169 bp overlap
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 272 bp overlap
ETV1 1 dataset
ChIP COLO-800 GSE80443.ETV1.COLO-800 194 bp overlap
ETV6 1 dataset
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 192 bp overlap
FLI1 2 datasets
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 206 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 246 bp overlap
FOS 1 dataset
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 296 bp overlap
FOSL1 2 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 296 bp overlap
ChIP K562 ENCFF455MKD 296 bp overlap
FOSL2 3 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 66 bp overlap
ChIP SK-N-SH ENCFF127ZDW 160 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 230 bp overlap
FOXA1 3 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 52 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 105 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 296 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_Unind GSE90454.FOXA2.BJ1-hTERT_Unind 73 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 144 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 150 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 61 bp overlap
ChIP DE DE-FOXA2-1 141 bp overlap
ChIP DE DE-FOXA2-2 94 bp overlap
GABPA 2 datasets
ChIP GM12878 ENCSR331HPA.GABPA.GM12878 72 bp overlap
ChIP SK-N-SH ENCSR000BTG.GABPA.SK-N-SH 88 bp overlap
GATA1 1 dataset
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 142 bp overlap
GATA2 3 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 171 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 192 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 184 bp overlap
GATA3 3 datasets
ChIP CD4_TH2 GSE72266.GATA3.CD4_TH2 229 bp overlap
ChIP Jurkat GSE76181.GATA3.Jurkat 296 bp overlap
ChIP SK-N-SH ENCFF040SSB 265 bp overlap
GATA4 2 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 86 bp overlap
ChIP foregut GSE117136.GATA4.foregut 238 bp overlap
GATA6 1 dataset
ChIP foregut GSE117136.GATA6.foregut 262 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 68 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 223 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 296 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 243 bp overlap
JUN 1 dataset
ChIP Karpas-299 GSE151413.JUN.Karpas-299 296 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 170 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 99 bp overlap
JUND 1 dataset
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 107 bp overlap
KDM1A 1 dataset
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 296 bp overlap
LDB1 1 dataset
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 114 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 250 bp overlap
MAF 2 datasets
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 147 bp overlap
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 124 bp overlap
MAX 2 datasets
ChIP SK-N-SH ENCFF285LXR 262 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 194 bp overlap
MED1 3 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 177 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 170 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 134 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 87 bp overlap
MYB 7 datasets
ChIP CD4_TH2 GSE72266.MYB.CD4_TH2 257 bp overlap
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 110 bp overlap
ChIP DU528 GSE94000.MYB.DU528 289 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 222 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 127 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 133 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 206 bp overlap
MYC 1 dataset
ChIP Jurkat GSE83777.MYC.Jurkat 140 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 296 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 111 bp overlap
NFIC 3 datasets
ChIP GM12878 ENCFF259FWL 271 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 115 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 229 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 120 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 198 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 80 bp overlap
RUNX1 2 datasets
ChIP ALL-SIL GSE102209.RUNX1.ALL-SIL 70 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 140 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 174 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 205 bp overlap
SMAD3 4 datasets
ChIP LX2_CALCIPOTRIOL_TGFB1 GSE38103.SMAD3.LX2_CALCIPOTRIOL_TGFB1 220 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 145 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 207 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 55 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 296 bp overlap
SMARCA4 9 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 264 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 212 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 296 bp overlap
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 296 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 207 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 294 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 271 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 246 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 246 bp overlap
SMARCB1 2 datasets
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 277 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 296 bp overlap
SPI1 6 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 166 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 174 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 211 bp overlap
ChIP GM12891 ENCFF563IUT 121 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 83 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 102 bp overlap
STAT3 1 dataset
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 175 bp overlap
STAT5A 1 dataset
ChIP GM12878 ENCSR000BQZ.STAT5A.GM12878 84 bp overlap
STAT5B 1 dataset
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 63 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 177 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 185 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 92 bp overlap
TCF12 2 datasets
ChIP Kasumi-1 GSE23730.TCF12.Kasumi-1 123 bp overlap
ChIP SK-N-SH ENCFF147AHB 211 bp overlap
TEAD4 1 dataset
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 169 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 165 bp overlap
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