chr5 : 12,321,716 12,322,594
878 bp 80 TFs 0 linked genes
This 878 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:12,316,716 – 12,327,594
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
ATF2 2 datasets
Motif DE_60h DE_60h-ATF2_MA1632.2 10 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 335 bp overlap
BCOR 3 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 223 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 244 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 315 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 286 bp overlap
BRD3 4 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 142 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 508 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 468 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 172 bp overlap
BRD4 8 datasets
ChIP MV4-11-B_BI00894999_100nM_4h GSE101821.BRD4.MV4-11-B_BI00894999_100nM_4h 279 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 414 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 723 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD4.MV4-11_IBET151_50nM 450 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD4.MV4-11_IBET151_50nM 141 bp overlap
ChIP MV4-11_IBET_SGC GSE71776.BRD4.MV4-11_IBET_SGC 114 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 303 bp overlap
ChIP hESC GSE33281.BRD4.hESC 62 bp overlap
BRD9 1 dataset
ChIP HeLa-S3 GSE129437.BRD9.HeLa-S3 288 bp overlap
CBX1 1 dataset
ChIP DKO GSE135580.CBX1.DKO 158 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 878 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 199 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 213 bp overlap
CREB1 2 datasets
Motif DE_60h DE_60h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 305 bp overlap
CTCF 1 dataset
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
DUX4 1 dataset
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 167 bp overlap
ChIP hESC GSE26097.EOMES.hESC 256 bp overlap
EP300 3 datasets
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 139 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 216 bp overlap
ChIP hESC GSE17917.EP300.hESC 300 bp overlap
ESR1 11 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 304 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 389 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 462 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 425 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 214 bp overlap
ChIP Ishikawa_Dex_E2 GSE109891.ESR1.Ishikawa_Dex_E2 140 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 226 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 339 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 251 bp overlap
ChIP Ishikawa_ETV4-KO1 GSE129803.ESR1.Ishikawa_ETV4-KO1 223 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 211 bp overlap
FEZF2 1 dataset
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
FOXC1 1 dataset
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 124 bp overlap
GATA2 2 datasets
ChIP SKH1 GSE87283.GATA2.SKH1 153 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 878 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 347 bp overlap
ChIP DE DE-GATA4-1 309 bp overlap
ChIP DE DE-GATA4-2 731 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 676 bp overlap
ChIP DE DE-GATA6-2 744 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 304 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 278 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 707 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 271 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 310 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 668 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 512 bp overlap
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
HOXB13 1 dataset
Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 458 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 536 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 393 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 513 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 435 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 435 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 96 bp overlap
Lef1 1 dataset
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MED1 2 datasets
ChIP MOLM-14_DHE GSE124963.MED1.MOLM-14_DHE 146 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 666 bp overlap
MEF2B 1 dataset
ChIP DLBCL GSE110682.MEF2B.DLBCL 227 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 355 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 276 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 646 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 573 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 232 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 835 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 681 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 719 bp overlap
ChIP hESC GSE20650.NANOG.hESC 221 bp overlap
ChIP hESC GSE18292.NANOG.hESC 198 bp overlap
NIPBL 3 datasets
ChIP WA09 GSE105028.NIPBL.WA09 309 bp overlap
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 460 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 210 bp overlap
NR1D2 1 dataset
Motif DE_60h DE_60h-NR1D2_MA1532.2 15 bp overlap
NR2C1 1 dataset
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR4A1 1 dataset
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
Nr1H2 1 dataset
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 274 bp overlap
POU5F1 12 datasets
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 519 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 403 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 691 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 196 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 295 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 403 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 226 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 540 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 757 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 180 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 199 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 164 bp overlap
Ptf1A 1 dataset
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
RARA 4 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 483 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 244 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 253 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 619 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 350 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 219 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000BIS.SIN3A.WA01 203 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 229 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 292 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 247 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 649 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 596 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 348 bp overlap
SMARCA4 4 datasets
ChIP NGP GSE134626.SMARCA4.NGP 50 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 289 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 360 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 413 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 293 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 428 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 236 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 345 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 375 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 569 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 661 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 150 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 379 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 150 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 216 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 204 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 154 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 252 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 243 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 221 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 815 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 878 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 239 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 206 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 208 bp overlap
TWIST1 1 dataset
Motif DE_60h DE_60h-TWIST1_MA1123.3 8 bp overlap
ZBTB18 1 dataset
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
ZBTB26 1 dataset
Motif DE_60h DE_60h-ZBTB26_MA1579.2 8 bp overlap
ZNF384 2 datasets
Motif DE_60h DE_60h-ZNF384_MA1125.2 8 bp overlap
Motif DE_60h DE_60h-ZNF384_MA1125.2 8 bp overlap