chr5 : 2,753,690 – 2,754,301
611 bp 65 TFs 3 linked genes
This 611 bp open chromatin element is linked to IRX2-DT, IRX2, and ENSG00000289075 and is bound by 65 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
IRX2-DT 1.6 kb Proximal Proximity
IRX2 2.0 kb Proximal Proximity
ENSG00000289075 2.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:2,748,690 – 2,759,301
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 161 bp overlap
ASH2L 2 datasets
ChIP WA01 ENCSR850KIP.ASH2L.WA01 251 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 235 bp overlap
ATF2 2 datasets
ChIP WA01 ENCSR000BQU.ATF2.WA01 261 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 58 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 211 bp overlap
BRD4 7 datasets
ChIP DND41_E GSE54379.BRD4.DND41_E 72 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 205 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 611 bp overlap
ChIP SUM159PT_300nMJQ1_24h GSE87418.BRD4.SUM159PT_300nMJQ1_24h 273 bp overlap
ChIP SUM159PT_300nMJQ1_24h GSE87418.BRD4.SUM159PT_300nMJQ1_24h 226 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 611 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 185 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 263 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 162 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 593 bp overlap
CREB1 3 datasets
ChIP H1 ENCFF955PMP 237 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 160 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 57 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 162 bp overlap
CTCF 2 datasets
ChIP SUM159 GSE46055.CTCF.SUM159 148 bp overlap
ChIP SUM159 GSE46055.CTCF.SUM159 165 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 240 bp overlap
ChIP BLaER1 ENCFF274GAT 119 bp overlap
ChIP BLaER1 ENCFF364PUR 180 bp overlap
ChIP BLaER1 ENCFF460KDD 133 bp overlap
E2F6 2 datasets
ChIP WA01 ENCSR000BSI.E2F6.WA01 215 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 240 bp overlap
ESR1 4 datasets
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 324 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 50 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 50 bp overlap
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 348 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 280 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 265 bp overlap
EZH2 14 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 592 bp overlap
ChIP A673 ENCFF790MVL 259 bp overlap
ChIP GM23338 ENCFF613YON 287 bp overlap
ChIP GM23338 ENCFF613YON 151 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 163 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 130 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 239 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 446 bp overlap
ChIP fibroblast of lung ENCFF479BAW 182 bp overlap
ChIP fibroblast of lung ENCFF479BAW 463 bp overlap
ChIP hepatocyte ENCFF118DKH 157 bp overlap
ChIP neural progenitor cell ENCFF018MKA 299 bp overlap
ChIP neural progenitor cell ENCFF018MKA 369 bp overlap
ChIP neural progenitor cell ENCFF472NFV 108 bp overlap
EZH2_phosphoT487 3 datasets
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 80 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 55 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 255 bp overlap
FOXA1 1 dataset
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 411 bp overlap
GATA6 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 175 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 245 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 611 bp overlap
HDAC1 1 dataset
ChIP AML GSE131939.HDAC1.AML 136 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000AVB.HDAC2.WA01 160 bp overlap
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 116 bp overlap
HOXB13 3 datasets
ChIP LNCaP GSE56288.HOXB13.LNCaP 183 bp overlap
ChIP LNCaP GSE96652.HOXB13.LNCaP 81 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 133 bp overlap
IKZF1 2 datasets
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 182 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 215 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 138 bp overlap
KDM5B 4 datasets
ChIP SUM159 GSE46055.KDM5B.SUM159 269 bp overlap
ChIP SUM159 GSE46055.KDM5B.SUM159 144 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 126 bp overlap
ChIP T-47D GSE46055.KDM5B.T-47D 185 bp overlap
MAFK 1 dataset
ChIP A549 ENCFF371EPR 124 bp overlap
MAX 2 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 326 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 196 bp overlap
MED1 2 datasets
ChIP SUM159PT_300nMJQ1_24h GSE87418.MED1.SUM159PT_300nMJQ1_24h 303 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.MED1.SUM159PT_DMSO_24h 611 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 317 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 148 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 588 bp overlap
ChIP hESC GSE18292.NANOG.hESC 133 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
NR3C1 4 datasets
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 296 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 371 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 137 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 140 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF833NJP 75 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 133 bp overlap
POU5F1 5 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 564 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 320 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 168 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 431 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 593 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 537 bp overlap
PPARA::RXRA 1 dataset
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Pparg::Rxra 1 dataset
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 213 bp overlap
RING1 2 datasets
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 181 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 276 bp overlap
RNF2 5 datasets
ChIP H1 ENCFF239FFS 337 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 229 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 227 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 598 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 66 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 343 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 127 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 204 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 232 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 442 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 534 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 611 bp overlap
SMARCC1 6 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 235 bp overlap
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 248 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 245 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 93 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 611 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 523 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 296 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 247 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 83 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 109 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 137 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 226 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 138 bp overlap
YY1 2 datasets
ChIP WA01 ENCSR000BKD.YY1.WA01 143 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 178 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 122 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
Znf423 1 dataset
Motif DE_12h DE_12h-Znf423_MA0116.1 15 bp overlap
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