chr1 : 85,437,094 85,437,461
367 bp 94 TFs 0 linked genes
This 367 bp open chromatin element has no linked target genes and is bound by 94 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:85,432,094 – 85,442,461
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
94 transcription factors
Source
Cell type
ALX3 1 dataset
Motif ES_0h ES_0h-ALX3_MA0634.2 6 bp overlap
ARRB1 1 dataset
ChIP LNCaP-C4-2 GSE55615.ARRB1.LNCaP-C4-2 131 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 144 bp overlap
BARX2 1 dataset
Motif ES_0h ES_0h-BARX2_MA1471.2 9 bp overlap
BRD4 2 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 180 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 189 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 191 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 200 bp overlap
DRGX 1 dataset
Motif ES_0h ES_0h-DRGX_MA1481.2 6 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 243 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 197 bp overlap
EMX1 1 dataset
Motif ES_0h ES_0h-EMX1_MA0612.3 6 bp overlap
EMX2 1 dataset
Motif ES_0h ES_0h-EMX2_MA0886.2 6 bp overlap
EN1 1 dataset
Motif ES_0h ES_0h-EN1_MA0027.3 6 bp overlap
ESR1 1 dataset
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 100 bp overlap
ETS1 1 dataset
Motif ES_0h ES_0h-ETS1_MA0098.4 9 bp overlap
EVX1 1 dataset
Motif ES_0h ES_0h-EVX1_MA0887.2 6 bp overlap
EVX2 1 dataset
Motif ES_0h ES_0h-EVX2_MA0888.2 6 bp overlap
FOXB1 1 dataset
Motif ES_0h ES_0h-FOXB1_MA0845.1 11 bp overlap
FOXD3 1 dataset
Motif ES_0h ES_0h-FOXD3_MA0041.3 14 bp overlap
GABPA 1 dataset
ChIP K-562 ENCSR000BLO.GABPA.K-562 133 bp overlap
GLIS2 1 dataset
Motif ES_0h ES_0h-GLIS2_MA0736.1 14 bp overlap
GSPT2 1 dataset
ChIP HEK293T GSE35197.GSPT2.HEK293T 197 bp overlap
GSX1 1 dataset
Motif ES_0h ES_0h-GSX1_MA0892.2 6 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 153 bp overlap
HOXA1 1 dataset
Motif ES_0h ES_0h-HOXA1_MA1495.2 6 bp overlap
HOXA2 1 dataset
Motif ES_0h ES_0h-HOXA2_MA0900.3 6 bp overlap
HOXB2 1 dataset
Motif ES_0h ES_0h-HOXB2_MA0902.3 6 bp overlap
HOXB3 1 dataset
Motif ES_0h ES_0h-HOXB3_MA0903.2 6 bp overlap
HOXB5 1 dataset
Motif ES_0h ES_0h-HOXB5_MA0904.3 6 bp overlap
HOXC8 1 dataset
Motif ES_0h ES_0h-HOXC8_MA1505.2 6 bp overlap
Hmga1 1 dataset
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
ISX 1 dataset
Motif ES_0h ES_0h-ISX_MA0654.2 6 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 159 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
Lhx3 1 dataset
Motif ES_0h ES_0h-Lhx3_MA0135.2 12 bp overlap
Lhx4 1 dataset
Motif ES_0h ES_0h-Lhx4_MA0704.2 6 bp overlap
Lhx8 1 dataset
Motif ES_0h ES_0h-Lhx8_MA0705.2 6 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 272 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 165 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 206 bp overlap
MIXL1 1 dataset
Motif ES_0h ES_0h-MIXL1_MA0662.2 6 bp overlap
MNX1 1 dataset
Motif ES_0h ES_0h-MNX1_MA0707.3 6 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYOD1 1 dataset
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 367 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 217 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 297 bp overlap
NKX6-2 1 dataset
Motif ES_0h ES_0h-NKX6-2_MA0675.2 6 bp overlap
NR2F1 1 dataset
Motif ES_0h ES_0h-NR2F1_MA0017.3 12 bp overlap
OSR2 1 dataset
Motif ES_0h ES_0h-OSR2_MA1646.2 8 bp overlap
PAX3 1 dataset
Motif ES_0h ES_0h-PAX3_MA0780.1 10 bp overlap
PDX1 1 dataset
Motif ES_0h ES_0h-PDX1_MA0132.3 6 bp overlap
PHOX2B 1 dataset
Motif ES_0h ES_0h-PHOX2B_MA0681.3 12 bp overlap
POU2F1 2 datasets
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 367 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 329 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 159 bp overlap
POU5F1B 2 datasets
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
POU6F1 1 dataset
Motif ES_0h ES_0h-POU6F1_MA0628.2 6 bp overlap
PRRX1 1 dataset
Motif ES_0h ES_0h-PRRX1_MA0716.2 6 bp overlap
Pax7 1 dataset
Motif ES_0h ES_0h-Pax7_MA0680.3 10 bp overlap
Pou5f1::Sox2 2 datasets
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 1 dataset
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 138 bp overlap
RAX2 1 dataset
Motif ES_0h ES_0h-RAX2_MA0717.2 6 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 190 bp overlap
RBPJ 1 dataset
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
SHOX 1 dataset
Motif ES_0h ES_0h-SHOX_MA0630.2 6 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 241 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 341 bp overlap
SPDEF 1 dataset
Motif ES_0h ES_0h-SPDEF_MA0686.2 10 bp overlap
Shox2 1 dataset
Motif ES_0h ES_0h-Shox2_MA0720.2 6 bp overlap
Stat5b 1 dataset
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
TBP 1 dataset
Motif ES_0h ES_0h-TBP_MA0108.3 7 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 190 bp overlap
TLX2 1 dataset
Motif ES_0h ES_0h-TLX2_MA1577.2 6 bp overlap
UNCX 1 dataset
Motif ES_0h ES_0h-UNCX_MA0721.2 6 bp overlap
VAX2 1 dataset
Motif ES_0h ES_0h-VAX2_MA0723.3 6 bp overlap
VEZF1 1 dataset
Motif ES_0h ES_0h-VEZF1_MA1578.2 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 216 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZIC4 1 dataset
Motif ES_0h ES_0h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ZNF114 1 dataset
ChIP GM23338 ENCFF631OSW 326 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 129 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 127 bp overlap
ZNF35 1 dataset
Motif ES_0h ES_0h-ZNF35_MA2333.1 7 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 333 bp overlap
ZNF93 1 dataset
Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap
mix-a 1 dataset
Motif ES_0h ES_0h-mix-a_MA0621.2 7 bp overlap