chr4 : 87,932,725 87,933,637
912 bp 88 TFs 0 linked genes
This 912 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:87,927,725 – 87,938,637
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 317 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 416 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 664 bp overlap
Arid3a 1 dataset
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCL11A 1 dataset
Motif ES_0h ES_0h-BCL11A_MA2324.1 7 bp overlap
BRD4 1 dataset
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 245 bp overlap
BRD7 1 dataset
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 215 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF128BID 330 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 153 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 529 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 305 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
EMX1 2 datasets
ChIP WTC11 ENCFF692RZJ 533 bp overlap
ChIP WTC11 ENCFF692RZJ 605 bp overlap
EN2 1 dataset
Motif ES_0h ES_0h-EN2_MA0642.3 7 bp overlap
ERG 2 datasets
ChIP WTC11 ENCFF011YUL 281 bp overlap
ChIP WTC11 ENCFF011YUL 166 bp overlap
ESRRA 1 dataset
ChIP WTC11 ENCFF591YCA 425 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 253 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 134 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 317 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 340 bp overlap
GBX1 1 dataset
Motif ES_0h ES_0h-GBX1_MA0889.2 7 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 345 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
IRF1 2 datasets
ChIP K-562 ENCSR854MCV.IRF1.K-562 616 bp overlap
ChIP K562 ENCFF277KTJ 291 bp overlap
JUND 2 datasets
ChIP WA01 ENCSR000BKP.JUND.WA01 140 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 146 bp overlap
KLF9 1 dataset
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
LBX1 1 dataset
Motif ES_0h ES_0h-LBX1_MA0618.2 7 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
LHX9 1 dataset
Motif ES_0h ES_0h-LHX9_MA0701.3 7 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 162 bp overlap
MEIS1 1 dataset
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif ES_0h ES_0h-MEIS3_MA0775.2 7 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
MXD4 1 dataset
ChIP WTC11 ENCFF044PLT 174 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 2 datasets
ChIP WA09 GSE105028.NANOG.WA09 108 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 102 bp overlap
NFATC4 2 datasets
ChIP WTC11 ENCFF744MZI 271 bp overlap
ChIP WTC11 ENCFF744MZI 271 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 378 bp overlap
NR5A1 1 dataset
ChIP hESC GSE101087.NR5A1.hESC 352 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 215 bp overlap
POLR2A 5 datasets
ChIP GM23338 ENCFF450WCS 912 bp overlap
ChIP H1 ENCFF566JSR 912 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF770YBQ 471 bp overlap
ChIP H1 ENCFF833NJP 484 bp overlap
POU1F1 1 dataset
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 79 bp overlap
PRRX2 3 datasets
Motif ES_0h ES_0h-PRRX2_MA0075.4 7 bp overlap
ChIP WTC11 ENCFF107JGJ 301 bp overlap
ChIP WTC11 ENCFF107JGJ 217 bp overlap
Prdm14 1 dataset
Motif ES_0h ES_0h-Prdm14_MA1998.2 8 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 109 bp overlap
SMARCA4 2 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 117 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 85 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 189 bp overlap
SRF 2 datasets
Motif ES_0h ES_0h-SRF_MA0083.3 16 bp overlap
ChIP H1 ENCFF036PEF 225 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 376 bp overlap
ChIP H1 ENCFF478SZO 485 bp overlap
TAF7 3 datasets
ChIP H1 ENCFF061XZZ 337 bp overlap
ChIP H1 ENCFF061XZZ 337 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 129 bp overlap
TP53 2 datasets
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 304 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 343 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 188 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 148 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 215 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZMAT4 3 datasets
ChIP WTC11 ENCFF608UXZ 76 bp overlap
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ChIP WTC11 ENCFF608UXZ 241 bp overlap
ZNF143 3 datasets
ChIP WA09 GSE105028.ZNF143.WA09 546 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 142 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 405 bp overlap
ZNF35 1 dataset
Motif ES_0h ES_0h-ZNF35_MA2333.1 7 bp overlap
ZNF396 1 dataset
ChIP WTC11 ENCFF776JWJ 250 bp overlap
ZNF416 1 dataset
ChIP WTC11 ENCFF407TAZ 271 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 97 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 251 bp overlap
ZNF512 1 dataset
ChIP WTC11 ENCFF086TTM 373 bp overlap
ZNF532 1 dataset
ChIP WTC11 ENCFF373VBX 285 bp overlap
ZNF671 2 datasets
ChIP WTC11 ENCFF053HBV 196 bp overlap
ChIP WTC11 ENCFF053HBV 265 bp overlap
ZNF75D 1 dataset
Motif ES_0h ES_0h-ZNF75D_MA1601.2 12 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 244 bp overlap