chr1 : 72,034,831 72,035,213
382 bp 91 TFs 0 linked genes
This 382 bp open chromatin element has no linked target genes and is bound by 91 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:72,029,831 – 72,040,213
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 382 bp overlap
AR 1 dataset
ChIP WTC11 ENCFF267GQJ 236 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BARHL1 1 dataset
Motif ES_0h ES_0h-BARHL1_MA0877.4 6 bp overlap
BARHL2 1 dataset
Motif ES_0h ES_0h-BARHL2_MA0635.2 6 bp overlap
BRD3 1 dataset
ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 78 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 101 bp overlap
Bcl11B 1 dataset
Motif ES_0h ES_0h-Bcl11B_MA1989.2 9 bp overlap
CDX1 1 dataset
Motif ES_0h ES_0h-CDX1_MA0878.3 10 bp overlap
CDX4 2 datasets
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
Motif ES_0h ES_0h-CDX4_MA1473.2 9 bp overlap
CEBPA 1 dataset
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CEBPG 1 dataset
Motif ES_0h ES_0h-CEBPG_MA1636.2 10 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 217 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 220 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 382 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 209 bp overlap
ERG 1 dataset
ChIP WTC11 ENCFF011YUL 281 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 245 bp overlap
Ebf4 1 dataset
Motif ES_0h ES_0h-Ebf4_MA2122.1 11 bp overlap
HLF 1 dataset
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
HOXA10 1 dataset
Motif ES_0h ES_0h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif ES_0h ES_0h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif ES_0h ES_0h-HOXD9_MA0913.3 9 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
JUND 1 dataset
Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 216 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 149 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 285 bp overlap
ChIP WTC11 ENCFF223QFY 382 bp overlap
MEIS1 2 datasets
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MXI1 1 dataset
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
MYC 1 dataset
ChIP H1 ENCFF794ZJT 265 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 4 datasets
ChIP GM23338 ENCFF065NZG 240 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 382 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 352 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 211 bp overlap
NFIL3 1 dataset
Motif ES_0h ES_0h-NFIL3_MA0025.3 9 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POU1F1 3 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 3 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 3 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 3 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 4 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 219 bp overlap
POU3F1 3 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 3 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 3 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 3 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F1 1 dataset
Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap
POU5F1 12 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 231 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 382 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 372 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 189 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 160 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 382 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 382 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 338 bp overlap
POU5F1B 3 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Prdm5 1 dataset
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 116 bp overlap
RELA 1 dataset
Motif ES_0h ES_0h-RELA_MA0107.1 10 bp overlap
RFX1 1 dataset
Motif ES_0h ES_0h-RFX1_MA0509.3 16 bp overlap
RFX3 1 dataset
Motif ES_0h ES_0h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif ES_0h ES_0h-RFX5_MA0510.3 14 bp overlap
RUNX2 1 dataset
Motif ES_0h ES_0h-RUNX2_MA0511.2 9 bp overlap
Runx1 1 dataset
Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 121 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 339 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
TBP 6 datasets
Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap
ChIP hESC GSE122298.TBP.hESC 212 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 177 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 220 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 181 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 189 bp overlap
TCF12 1 dataset
ChIP H1 ENCFF203EBH 210 bp overlap
TP53 2 datasets
Motif ES_0h ES_0h-TP53_MA0106.3 18 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 335 bp overlap
TRERF1 1 dataset
ChIP WTC11 ENCFF113BUM 245 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 111 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 171 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 310 bp overlap
ChIP WA01 GSE39096.YY1.WA01 157 bp overlap
Yy1 1 dataset
Motif ES_0h ES_0h-Yy1_MA0095.4 8 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 84 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 274 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 264 bp overlap
ZNF184 1 dataset
ChIP WTC11 ENCFF352POG 382 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 340 bp overlap
ZNF708 1 dataset
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ZNF770 1 dataset
Motif ES_0h ES_0h-ZNF770_MA2099.1 8 bp overlap
ZSCAN18 1 dataset
ChIP WTC11 ENCFF867QWX 257 bp overlap