chr4 : 28,682,934 – 28,683,171
237 bp 97 TFs 0 linked genes
This 237 bp open chromatin element has no linked target genes and is bound by 97 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:28,677,934 – 28,688,171
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
97 transcription factors
Source
Cell type
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 59 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 145 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 173 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 135 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 146 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 237 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 237 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 237 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCFF432ZEW 237 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 232 bp overlap
EP300 3 datasets
ChIP H1 ENCFF927IYK 237 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 211 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 237 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 206 bp overlap
ChIP DE DE-FOXA2-2 237 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 237 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 237 bp overlap
ChIP DE DE-GATA4-2 237 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 237 bp overlap
ChIP DE DE-GATA6-2 237 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 237 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 233 bp overlap
HIC2 2 datasets
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
Motif ES_0h ES_0h-HIC2_MA0738.2 6 bp overlap
HMBOX1 1 dataset
Motif DE_12h DE_12h-HMBOX1_MA0895.2 7 bp overlap
HOXA3 2 datasets
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap
HOXA4 2 datasets
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif ES_0h ES_0h-HOXB4_MA1499.2 6 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif ES_0h ES_0h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif ES_0h ES_0h-HOXD4_MA1507.2 6 bp overlap
HSF1 3 datasets
Motif DE_12h DE_12h-HSF1_MA0486.2 13 bp overlap
Motif ES_0h ES_0h-HSF1_MA0486.2 13 bp overlap
ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 237 bp overlap
HSF2 2 datasets
Motif DE_12h DE_12h-HSF2_MA0770.1 13 bp overlap
Motif ES_0h ES_0h-HSF2_MA0770.1 13 bp overlap
HSF4 2 datasets
Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap
Motif ES_0h ES_0h-HSF4_MA0771.1 13 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
Lhx3 1 dataset
Motif DE_12h DE_12h-Lhx3_MA0135.2 12 bp overlap
MAF::NFE2 2 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MGA::EVX1 2 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif ES_0h ES_0h-MGAEVX1_MA1960.2 11 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 237 bp overlap
MSANTD3 2 datasets
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
Motif ES_0h ES_0h-MSANTD3_MA1523.2 7 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 219 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 237 bp overlap
ChIP H1 ENCFF747ZPQ 204 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 237 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 237 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 237 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 237 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 237 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 237 bp overlap
ChIP hESC GSE20650.NANOG.hESC 237 bp overlap
ChIP hESC GSE18292.NANOG.hESC 227 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
NKX6-1 2 datasets
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
Motif ES_0h ES_0h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 2 datasets
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
Motif ES_0h ES_0h-NKX6-3_MA1530.2 8 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nr2e3 2 datasets
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Motif ES_0h ES_0h-Nr2e3_MA0164.2 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 226 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 65 bp overlap
POU5F1 11 datasets
ChIP GM23338 ENCFF333SNB 237 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 237 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 237 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 176 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 237 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 237 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 204 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 237 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 190 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 228 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Pgr 2 datasets
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Motif ES_0h ES_0h-Pgr_MA2323.1 17 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 131 bp overlap
REST 24 datasets
ChIP GM23338 ENCFF024TCL 228 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 129 bp overlap
ChIP H1 ENCFF203SWY 189 bp overlap
ChIP H1 ENCFF429RUE 181 bp overlap
ChIP HL-60 ENCFF589LOF 237 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 108 bp overlap
ChIP HeLa-S3 ENCFF911DTC 170 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 162 bp overlap
ChIP Ishikawa ENCFF456OHV 222 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 167 bp overlap
ChIP MCF-7 ENCFF893RRD 225 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 116 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 237 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 206 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 237 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 222 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 167 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 172 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 200 bp overlap
ChIP liver ENCFF240FWT 237 bp overlap
ChIP liver ENCFF577AZT 237 bp overlap
ChIP liver ENCSR893QWP.REST.liver 237 bp overlap
ChIP liver ENCSR867WPH.REST.liver 187 bp overlap
ChIP neural ENCSR000BTV.REST.neural 119 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Motif ES_0h ES_0h-Rarb_MA0857.1 16 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 169 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 142 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 200 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 237 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 237 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 237 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 237 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 237 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 237 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 237 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 237 bp overlap
SOX13 1 dataset
Motif DE_12h DE_12h-SOX13_MA1120.2 7 bp overlap
SOX15 2 datasets
Motif DE_12h DE_12h-SOX15_MA1152.2 7 bp overlap
Motif ES_0h ES_0h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 237 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 237 bp overlap
SOX18 2 datasets
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
Motif ES_0h ES_0h-SOX18_MA1563.2 8 bp overlap
SOX2 8 datasets
Motif DE_12h DE_12h-SOX2_MA0143.5 7 bp overlap
ChIP H9 GSE46837.SOX2.H9 212 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 237 bp overlap
ChIP hESC GSE69479.SOX2.hESC 237 bp overlap
ChIP hESC GSE18292.SOX2.hESC 184 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 237 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 192 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 192 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 237 bp overlap
SOX8 2 datasets
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SOX9 2 datasets
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 237 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 206 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 139 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SRY 2 datasets
Motif DE_12h DE_12h-SRY_MA0084.2 7 bp overlap
Motif ES_0h ES_0h-SRY_MA0084.2 7 bp overlap
STAT1::STAT2 2 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap
Sox3 1 dataset
Motif DE_12h DE_12h-Sox3_MA0514.3 7 bp overlap
Sox5 2 datasets
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 237 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 150 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 224 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 204 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 195 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 237 bp overlap
TP63 2 datasets
Motif DE_12h DE_12h-TP63_MA0525.2 18 bp overlap
Motif ES_0h ES_0h-TP63_MA0525.2 18 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 122 bp overlap
ZBTB12 2 datasets
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
Motif ES_0h ES_0h-ZBTB12_MA1649.2 7 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 108 bp overlap
ZNF136 2 datasets
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
Motif ES_0h ES_0h-ZNF136_MA1588.1 15 bp overlap
ZNF16 2 datasets
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 231 bp overlap
ZNF263 2 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF354A 2 datasets
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
Motif ES_0h ES_0h-ZNF354A_MA1978.2 20 bp overlap
ZNF677 2 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZSCAN21 2 datasets
Motif DE_12h DE_12h-ZSCAN21_MA2336.1 7 bp overlap
Motif ES_0h ES_0h-ZSCAN21_MA2336.1 7 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
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