chr4 : 4,866,173 – 4,866,537
364 bp 68 TFs 1 linked gene
This 364 bp open chromatin element is linked to MSX1 and is bound by 68 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MSX1 6.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:4,861,173 – 4,871,537
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 221 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 228 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 364 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 148 bp overlap
BMPR1A 1 dataset
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 283 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 364 bp overlap
BRD2 2 datasets
ChIP NCI-H23 GSE104481.BRD2.NCI-H23 235 bp overlap
ChIP NCI-H23 GSE113714.BRD2.NCI-H23 340 bp overlap
BRD4 3 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 293 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 364 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 172 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 364 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 226 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 120 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 364 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 364 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 283 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 194 bp overlap
ERG 19 datasets
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 166 bp overlap
ChIP VCaP GSE28950.ERG.VCaP 215 bp overlap
ChIP VCaP GSE83650.ERG.VCaP 170 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 170 bp overlap
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 215 bp overlap
ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 184 bp overlap
ChIP VCaP_DHT GSE79128.ERG.VCaP_DHT 249 bp overlap
ChIP VCaP_SH1_DHT GSE79128.ERG.VCaP_SH1_DHT 259 bp overlap
ChIP VCaP_SH2_DHT GSE79128.ERG.VCaP_SH2_DHT 275 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 293 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 117 bp overlap
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 169 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 187 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 171 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 212 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 161 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 122 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 284 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 341 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 358 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 110 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 292 bp overlap
ESRRA 2 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 130 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 160 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 103 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 311 bp overlap
ChIP HUVEC-C_VEGF_1H GSE41166.ETS1.HUVEC-C_VEGF_1H 292 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 157 bp overlap
ETV2 1 dataset
ChIP induced-endothelial-cell_Veh GSE123906.ETV2.induced-endothelial-cell_Veh 275 bp overlap
EZH2 23 datasets
ChIP A673 ENCFF790MVL 269 bp overlap
ChIP A673 ENCFF790MVL 364 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 364 bp overlap
ChIP DOHH2 ENCFF528GDC 244 bp overlap
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 197 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 364 bp overlap
ChIP GM23338 ENCFF613YON 364 bp overlap
ChIP GM23338 ENCFF886DXX 364 bp overlap
ChIP H1 ENCFF232NZA 364 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 271 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 91 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 364 bp overlap
ChIP fibroblast of lung ENCFF479BAW 69 bp overlap
ChIP hepatocyte ENCFF118DKH 199 bp overlap
ChIP keratinocyte ENCFF070STK 136 bp overlap
ChIP keratinocyte ENCFF070STK 136 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 265 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 64 bp overlap
ChIP neural cell ENCFF610EPB 131 bp overlap
ChIP neural cell ENCFF610EPB 119 bp overlap
ChIP neural progenitor cell ENCFF018MKA 364 bp overlap
ChIP neural progenitor cell ENCFF472NFV 364 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 217 bp overlap
EZH2_phosphoT487 3 datasets
ChIP DOHH2 ENCSR562NOP.EZH2_phosphoT487.DOHH2 200 bp overlap
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 184 bp overlap
ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 128 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 205 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 294 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 170 bp overlap
GABPA 10 datasets
ChIP A-549 ENCSR000BPY.GABPA.A-549 274 bp overlap
ChIP H1 ENCFF739QFD 282 bp overlap
ChIP HL-60 ENCSR000BTK.GABPA.HL-60 165 bp overlap
ChIP SK-N-SH ENCFF755TJJ 188 bp overlap
ChIP SK-N-SH ENCSR000BTG.GABPA.SK-N-SH 234 bp overlap
ChIP VCaP GSE49091.GABPA.VCaP 200 bp overlap
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 215 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 231 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 238 bp overlap
ChIP liver ENCSR350ORK.GABPA.liver 149 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 349 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 94 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 364 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 235 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 126 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 181 bp overlap
IKZF1 1 dataset
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 197 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 51 bp overlap
KDM1A 4 datasets
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 159 bp overlap
ChIP Kasumi-1_GSK690 GSE71739.KDM1A.Kasumi-1_GSK690 241 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 102 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 118 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 364 bp overlap
ChIP H1 ENCFF078LED 90 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 346 bp overlap
MAX 4 datasets
ChIP Ishikawa ENCFF064TDQ 207 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 123 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 185 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 120 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 196 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 364 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94782.MYCN.Kelly 106 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 364 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 364 bp overlap
NCOR2 1 dataset
ChIP LS180_125 GSE39277.NCOR2.LS180_125 56 bp overlap
NR2F2 1 dataset
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 158 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 146 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 74 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 149 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF706IUS 356 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 136 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 364 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 166 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 364 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 198 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 364 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 364 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 181 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 134 bp overlap
RUNX1T1 2 datasets
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 341 bp overlap
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 187 bp overlap
SIN3A 1 dataset
ChIP PANC-1 ENCSR000BOW.SIN3A.PANC-1 136 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 59 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 122 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 138 bp overlap
SMARCA4 5 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 243 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 69 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 241 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 123 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 253 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 364 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 181 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 364 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 313 bp overlap
SREBP2 1 dataset
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 76 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 297 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 364 bp overlap
SUZ12 6 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 364 bp overlap
ChIP GM12878 ENCFF498QAM 72 bp overlap
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 364 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 95 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 184 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 224 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 169 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCFF772OTG 55 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 189 bp overlap
TP63 1 dataset
ChIP breast-organoid GSE113909.TP63.breast-organoid 235 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 255 bp overlap
ZFX 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 182 bp overlap
ZKSCAN1 2 datasets
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 132 bp overlap
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 117 bp overlap
ZKSCAN8 3 datasets
ChIP K-562 ENCSR448UKK.ZKSCAN8.K-562 129 bp overlap
ChIP K562 ENCFF387ETI 364 bp overlap
ChIP WTC11 ENCFF666HNJ 193 bp overlap
Zfp809 1 dataset
Motif DE_24h DE_24h-Zfp809_MA2125.1 9 bp overlap
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