chr4 : 4,862,719 – 4,863,094
375 bp 70 TFs 1 linked gene
This 375 bp open chromatin element is linked to MSX1 and is bound by 70 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MSX1 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:4,857,719 – 4,868,094
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 252 bp overlap
AGO2 1 dataset
ChIP HepG2 ENCFF252VFI 375 bp overlap
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 135 bp overlap
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 355 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 300 bp overlap
BCOR 3 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 198 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 375 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 375 bp overlap
BRD4 8 datasets
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 194 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 241 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 244 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 209 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 200 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 375 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 268 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 272 bp overlap
CBX7 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 304 bp overlap
CBX8 2 datasets
ChIP H1 ENCFF095JHA 249 bp overlap
ChIP H1 ENCFF095JHA 178 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 297 bp overlap
CREBBP_M768 1 dataset
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 54 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 375 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 375 bp overlap
CTCF 2 datasets
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 144 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 248 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 166 bp overlap
ESR1 5 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 153 bp overlap
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 179 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 229 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 375 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 375 bp overlap
EZH2 12 datasets
ChIP GM23338 ENCFF613YON 375 bp overlap
ChIP GM23338 ENCFF886DXX 375 bp overlap
ChIP H1 ENCFF232NZA 375 bp overlap
ChIP astrocyte ENCFF365JTP 375 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 143 bp overlap
ChIP hESC GSE113817.EZH2.hESC 375 bp overlap
ChIP hepatocyte ENCFF552DZB 375 bp overlap
ChIP keratinocyte ENCFF070STK 375 bp overlap
ChIP keratinocyte ENCFF070STK 165 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 116 bp overlap
ChIP neural progenitor cell ENCFF018MKA 375 bp overlap
ChIP neural progenitor cell ENCFF472NFV 375 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 163 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 197 bp overlap
GATA6 3 datasets
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 375 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 258 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 249 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 375 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 278 bp overlap
HNRNPLL 1 dataset
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 105 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 347 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 200 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 357 bp overlap
MBD2 1 dataset
ChIP HMEC-1 GSE63233.MBD2.HMEC-1 202 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 121 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 266 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 351 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 237 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 256 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 120 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 375 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 375 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 375 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 228 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 304 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 118 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 375 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 375 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 375 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 375 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 263 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 375 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 375 bp overlap
RBM22 2 datasets
ChIP K-562 ENCSR848AOP.RBM22.K-562 241 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 246 bp overlap
RELA 2 datasets
ChIP HEK293_60_min GSE89017.RELA.HEK293_60_min 263 bp overlap
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 375 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 375 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 375 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 375 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 206 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 116 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 371 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 197 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 114 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 375 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 241 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 243 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 314 bp overlap
SMARCC1 1 dataset
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 375 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 259 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 185 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 375 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 369 bp overlap
SSRP1 1 dataset
ChIP HT-1080_AclacinomycinA GSE107595.SSRP1.HT-1080_AclacinomycinA 375 bp overlap
STAT1 3 datasets
ChIP CD14 GSE43036.STAT1.CD14 139 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 191 bp overlap
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 121 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 150 bp overlap
SUPT5H 2 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 375 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 312 bp overlap
SUZ12 8 datasets
ChIP H1 ENCFF507HGF 262 bp overlap
ChIP H1 ENCFF881NFR 375 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 298 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 296 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 297 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 309 bp overlap
ChIP NCCIT GSE71675.SUZ12.NCCIT 62 bp overlap
ChIP NT2/D1 ENCFF574SXS 201 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 263 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 179 bp overlap
TARDBP 1 dataset
ChIP Hep-G2 ENCSR145CXH.TARDBP.Hep-G2 256 bp overlap
TCF12 2 datasets
ChIP WA01 ENCSR000BIT.TCF12.WA01 164 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 159 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 263 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 235 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 245 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 333 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 227 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 120 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 300 bp overlap
ZBTB33 3 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 375 bp overlap
ChIP K562 ENCFF427SDV 350 bp overlap
ChIP K562 ENCFF875HLX 164 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 121 bp overlap
ZNF274 1 dataset
ChIP Hep-G2 ENCSR871VNN.ZNF274.Hep-G2 189 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 70 bp overlap
ZNF407 1 dataset
ChIP Hep-G2 ENCSR005WGY.ZNF407.Hep-G2 245 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 375 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 237 bp overlap
Huangfu Lab · Publications · Resources · Contact