chr3 : 187,568,940 187,569,377
437 bp 132 TFs 0 linked genes
This 437 bp open chromatin element has no linked target genes and is bound by 132 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:187,563,940 – 187,574,377
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
132 transcription factors
Source
Cell type
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 254 bp overlap
Alx1 1 dataset
Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BACH1 1 dataset
Motif DE_48h DE_48h-BACH1_MA1633.2 9 bp overlap
BARX1 2 datasets
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BRD4 2 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 283 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 303 bp overlap
BSX 2 datasets
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
Crx 1 dataset
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
DLX1 2 datasets
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
DMRTA2 1 dataset
Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap
DMRTC2 1 dataset
Motif DE_48h DE_48h-DMRTC2_MA1479.2 11 bp overlap
Dlx2 1 dataset
Motif DE_48h DE_48h-Dlx2_MA0885.3 8 bp overlap
Dlx3 2 datasets
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_48h DE_48h-Dlx5_MA1476.3 8 bp overlap
EGR1 1 dataset
Motif DE_48h DE_48h-EGR1_MA0162.5 10 bp overlap
EGR3 1 dataset
Motif DE_48h DE_48h-EGR3_MA0732.2 11 bp overlap
EGR4 1 dataset
Motif DE_48h DE_48h-EGR4_MA0733.2 11 bp overlap
EOMES 2 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 234 bp overlap
ESR1 1 dataset
Motif DE_48h DE_48h-ESR1_MA0112.4 15 bp overlap
ESR2 1 dataset
Motif DE_48h DE_48h-ESR2_MA0258.2 15 bp overlap
Elf5 1 dataset
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
FEZF2 1 dataset
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
FIGLA 1 dataset
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
FOSL2 2 datasets
Motif DE_48h DE_48h-FOSL2_MA0478.2 10 bp overlap
Motif DE_48h DE_48h-FOSL2_MA0478.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 437 bp overlap
ChIP DE DE-FOXA2-2 414 bp overlap
FOXC1 1 dataset
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap
FOXD3 2 datasets
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 161 bp overlap
GABPA 1 dataset
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 437 bp overlap
ChIP DE DE-GATA4-2 437 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 437 bp overlap
ChIP DE DE-GATA6-2 437 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 284 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 437 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 263 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 295 bp overlap
GBX2 2 datasets
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
GSC 1 dataset
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HESX1 2 datasets
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 112 bp overlap
HOXA7 2 datasets
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
HOXB13 1 dataset
Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap
Hmx1 1 dataset
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
Hoxa13 1 dataset
Motif DE_48h DE_48h-Hoxa13_MA0650.4 8 bp overlap
IKZF2 1 dataset
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
INSM1 1 dataset
Motif DE_48h DE_48h-INSM1_MA0155.1 12 bp overlap
IRF4 1 dataset
ChIP BC-3 GSE132777.IRF4.BC-3 295 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 382 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 353 bp overlap
LBX2 2 datasets
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
LIN54 1 dataset
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
MAFK 1 dataset
Motif DE_48h DE_48h-MAFK_MA0496.4 10 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 261 bp overlap
MSX1 2 datasets
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
Mafg 1 dataset
Motif DE_48h DE_48h-Mafg_MA0659.4 12 bp overlap
Msx3 2 datasets
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NANOG 3 datasets
ChIP WA01 ERP004238.NANOG.WA01 127 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 225 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 200 bp overlap
NCAPH2 1 dataset
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 323 bp overlap
NEUROD1 3 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 387 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 385 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 213 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 188 bp overlap
NFIB 5 datasets
Motif DE_48h DE_48h-NFIB_MA1643.2 17 bp overlap
ChIP MCF-7 ENCFF799WGQ 144 bp overlap
ChIP MCF-7 ENCFF925CGH 226 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 327 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 372 bp overlap
NFIC 4 datasets
Motif DE_48h DE_48h-NFIC_MA1527.2 15 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 377 bp overlap
ChIP K562 ENCFF167YID 374 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 125 bp overlap
NFIX 2 datasets
Motif DE_48h DE_48h-NFIX_MA1528.2 14 bp overlap
ChIP K562 ENCFF382SJS 301 bp overlap
NR1D1 1 dataset
Motif DE_48h DE_48h-NR1D1_MA1531.2 14 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 274 bp overlap
Nfe2l2 1 dataset
Motif DE_48h DE_48h-Nfe2l2_MA0150.3 11 bp overlap
Nkx2-1 1 dataset
Motif DE_48h DE_48h-Nkx2-1_MA1994.2 7 bp overlap
Nobox 2 datasets
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
Nr2F6 1 dataset
Motif DE_48h DE_48h-Nr2F6_MA0728.1 15 bp overlap
Nr2e3 1 dataset
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
OTX1 1 dataset
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap
PAX3 1 dataset
Motif DE_48h DE_48h-PAX3_MA0780.1 10 bp overlap
PHOX2A 1 dataset
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
PHOX2B 1 dataset
Motif DE_48h DE_48h-PHOX2B_MA0681.3 12 bp overlap
PITX1 1 dataset
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Pax7 1 dataset
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Plagl1 1 dataset
Motif DE_48h DE_48h-Plagl1_MA1615.2 8 bp overlap
Prdm15 1 dataset
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 1 dataset
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
RAX 2 datasets
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RELA 1 dataset
Motif DE_48h DE_48h-RELA_MA0107.1 10 bp overlap
RHOXF1 1 dataset
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap
SIX1 1 dataset
Motif DE_48h DE_48h-SIX1_MA1118.2 9 bp overlap
SIX2 1 dataset
Motif DE_48h DE_48h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 334 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 323 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 437 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 428 bp overlap
SOX13 1 dataset
Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 401 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 437 bp overlap
SOX2 1 dataset
Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap
SOX9 1 dataset
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 437 bp overlap
SP5 1 dataset
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Sox3 1 dataset
Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap
Stat6 2 datasets
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
TBX1 1 dataset
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
VENTX 1 dataset
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
ZBTB18 1 dataset
Motif DE_48h DE_48h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 1 dataset
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
ZNF135 1 dataset
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
ZNF16 2 datasets
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
Motif DE_48h DE_48h-ZNF16_MA1654.2 21 bp overlap
ZNF281 1 dataset
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
ZNF382 1 dataset
Motif DE_48h DE_48h-ZNF382_MA1594.1 24 bp overlap
ZNF460 1 dataset
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
ZNF582 1 dataset
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
ZNF707 2 datasets
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap
ZNF770 1 dataset
Motif DE_48h DE_48h-ZNF770_MA2099.1 8 bp overlap
Zfp809 1 dataset
Motif DE_48h DE_48h-Zfp809_MA2125.1 9 bp overlap