chr3 : 181,699,591 181,699,969
378 bp 68 TFs 2 linked genes
This 378 bp open chromatin element is linked to ENSG00000276690 and ENSG00000239381 and is bound by 68 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000276690 at TSS At TSS Proximity
ENSG00000239381 641 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:181,694,591 – 181,704,969
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 158 bp overlap
ARID2 3 datasets
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 276 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 254 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 362 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 288 bp overlap
BCL11A 2 datasets
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 127 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 174 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 369 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 155 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 160 bp overlap
BMI1 1 dataset
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 150 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 183 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 186 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 156 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap
BRD4 11 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 338 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 378 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 369 bp overlap
ChIP OCI-Ly1_DMSO GSE53601.BRD4.OCI-Ly1_DMSO 378 bp overlap
ChIP OCI-Ly1_JQ1 GSE53601.BRD4.OCI-Ly1_JQ1 378 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 378 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 334 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 192 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 281 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 378 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 326 bp overlap
CBX7 1 dataset
ChIP hESC GSE133412.CBX7.hESC 206 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 378 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 344 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 182 bp overlap
CTCF 28 datasets
ChIP HAP1 GSE94992.CTCF.HAP1 166 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 237 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 131 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 132 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 193 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 133 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 188 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 248 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 378 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 165 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 312 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF255MAF 276 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 64 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 378 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF514PNC 378 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 360 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 378 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 83 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 285 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 220 bp overlap
ChIP nerve_tibial ENCSR469POZ.CTCF.nerve_tibial 110 bp overlap
ChIP nerve_tibial ENCSR434XLP.CTCF.nerve_tibial 115 bp overlap
ChIP neural progenitor cell ENCFF420RBO 205 bp overlap
ChIP neural progenitor cell ENCFF420RBO 378 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 151 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 156 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 109 bp overlap
ChIP tibial nerve ENCFF665IWH 250 bp overlap
DPF2 3 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 313 bp overlap
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 378 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 175 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 290 bp overlap
EZH2 3 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 339 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 311 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 339 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 142 bp overlap
GATA1 2 datasets
ChIP CD34_Day9_30min GSE104676.GATA1.CD34_Day9_30min 141 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 117 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HNRNPK 1 dataset
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 233 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 101 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 325 bp overlap
KMT2C 1 dataset
ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 336 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 319 bp overlap
MTF2 2 datasets
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 317 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 355 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 368 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 250 bp overlap
PAX5 1 dataset
ChIP fetal_testis GSE100639.PAX5.fetal_testis 165 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 378 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 378 bp overlap
PKNOX1 6 datasets
ChIP GM12878 ENCFF589FCY 150 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 312 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 374 bp overlap
ChIP K562 ENCFF236IUS 236 bp overlap
ChIP MCF-7 ENCFF116OCS 201 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 329 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 212 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 235 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 376 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 153 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 256 bp overlap
RAD21 1 dataset
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 360 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 279 bp overlap
RELA 2 datasets
ChIP 786-M1A GSE98012.RELA.786-M1A 55 bp overlap
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 122 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 229 bp overlap
RNF2 6 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 378 bp overlap
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 304 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 131 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 243 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 310 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 169 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 353 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 336 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 373 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 178 bp overlap
SMC1 2 datasets
ChIP HAP1 GSE94992.SMC1.HAP1 264 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 375 bp overlap
SOX2 1 dataset
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 179 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 288 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 258 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 257 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 374 bp overlap
SUZ12 1 dataset
ChIP MCF-7 ENCSR757EMK.SUZ12.MCF-7 155 bp overlap
TBP 8 datasets
ChIP H1 ENCFF859IIO 119 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 332 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 183 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 205 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 276 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 219 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 219 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 244 bp overlap
TFCP2 1 dataset
Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 288 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 113 bp overlap
ZNF140 1 dataset
Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 157 bp overlap
ZNF319 1 dataset
ChIP K562 ENCFF561ZSB 110 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 122 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap