chr3 : 169,008,862 169,009,227
365 bp 89 TFs 1 linked gene
This 365 bp open chromatin element is linked to LINC01997 and is bound by 89 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01997 5.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:169,003,862 – 169,014,227
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
AR 3 datasets
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 126 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.AR.LNCaP_SHGATA2_R1881 95 bp overlap
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 179 bp overlap
ARID1A 2 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 356 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 333 bp overlap
BCL11A 2 datasets
ChIP HEK293 ENCFF294OHB 263 bp overlap
ChIP HEK293 ENCSR021DJC.BCL11A.HEK293 200 bp overlap
BCL6B 2 datasets
ChIP HEK293 ENCFF555YRB 290 bp overlap
ChIP HEK293 ENCSR673SGK.BCL6B.HEK293 254 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_SIRUNX1ETO GSE60130.CEBPA.Kasumi-1_SIRUNX1ETO 142 bp overlap
CEBPB 2 datasets
ChIP Ishikawa ENCFF010USJ 260 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 202 bp overlap
CTCF 8 datasets
ChIP HAP1 GSE152721.CTCF.HAP1 167 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 181 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 203 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 263 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 58 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 149 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 211 bp overlap
ChIP endodermal cell ENCFF471YCZ 292 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 269 bp overlap
EHF 1 dataset
ChIP primary-bronchial-epithelial GSE85401.EHF.primary-bronchial-epithelial 154 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 364 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 365 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 365 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 178 bp overlap
ESR1 7 datasets
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 295 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 211 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_4 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_4 344 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_5 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_5 236 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_6 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_6 360 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 365 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 365 bp overlap
FOS 2 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 365 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 83 bp overlap
FOXA1 14 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 198 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 237 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 365 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 334 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 365 bp overlap
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 62 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 159 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 131 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 365 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 365 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 365 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 96 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 152 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 86 bp overlap
FOXA2 6 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 248 bp overlap
ChIP BJ1-hTERT_Mimo GSE90454.FOXA2.BJ1-hTERT_Mimo 359 bp overlap
ChIP BJ1-hTERT_Mimo_Release GSE90454.FOXA2.BJ1-hTERT_Mimo_Release 273 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 365 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 365 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 365 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 107 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 73 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 73 bp overlap
GLI2 2 datasets
ChIP HEK293 ENCFF700EUN 274 bp overlap
ChIP HEK293 ENCSR978EQY.GLI2.HEK293 170 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 118 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 288 bp overlap
HNF1A 2 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 152 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 298 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 365 bp overlap
HOXA9 1 dataset
ChIP HEK293-FT GSE62586.HOXA9.HEK293-FT 129 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 365 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 365 bp overlap
INSM2 2 datasets
ChIP HEK293 ENCFF008ZWC 168 bp overlap
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 365 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 358 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 309 bp overlap
KLF10 2 datasets
ChIP HEK293 ENCFF326EGX 365 bp overlap
ChIP HEK293 ENCSR006GAQ.KLF10.HEK293 178 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 80 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 357 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 271 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 236 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 204 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 314 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 170 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 206 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCFF065NZG 177 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 284 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 209 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 320 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 280 bp overlap
ChIP hESC GSE18292.NANOG.hESC 97 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 321 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 223 bp overlap
NUTM1 2 datasets
ChIP NMC24335 GSE96775.NUTM1.NMC24335 309 bp overlap
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 365 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 226 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 337 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 278 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 276 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 276 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 263 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 187 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 281 bp overlap
SMARCA4 4 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 85 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 67 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 365 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 108 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 365 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 102 bp overlap
SOX2 3 datasets
ChIP HCC2814 GSE137459.SOX2.HCC2814 360 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 216 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 251 bp overlap
SP2 2 datasets
ChIP HEK293 ENCFF181QXT 365 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 231 bp overlap
SP3 2 datasets
ChIP HEK293 ENCFF087XLA 340 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 223 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 244 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 365 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 365 bp overlap
STAT3 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 83 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 365 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 256 bp overlap
TSHZ1 2 datasets
ChIP HEK293 ENCFF893BGV 243 bp overlap
ChIP HEK293 ENCSR217WRC.TSHZ1.HEK293 188 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 109 bp overlap
ZBTB1 1 dataset
ChIP HEK293 ENCFF916DEM 174 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 188 bp overlap
ZEB1 1 dataset
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 164 bp overlap
ZFP37 2 datasets
ChIP HEK293 ENCFF968PWB 306 bp overlap
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 267 bp overlap
ZNF10 1 dataset
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 103 bp overlap
ZNF184 2 datasets
ChIP HEK293 ENCFF221CII 225 bp overlap
ChIP HEK293 ENCSR020UPN.ZNF184.HEK293 217 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 365 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 363 bp overlap
ZNF24 2 datasets
ChIP HEK293 ENCFF308WOW 345 bp overlap
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 266 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 207 bp overlap
ZNF350 2 datasets
ChIP HEK293 ENCFF428BAO 323 bp overlap
ChIP HEK293 ENCSR854ORP.ZNF350.HEK293 216 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 343 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 365 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCFF799ATK 365 bp overlap
ZNF394 2 datasets
ChIP HEK293 ENCFF236OPX 262 bp overlap
ChIP HEK293 ENCSR125DNC.ZNF394.HEK293 288 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCFF184XEW 326 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 312 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 162 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 300 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 315 bp overlap
ZNF639 2 datasets
ChIP HEK293 ENCFF971ZNH 254 bp overlap
ChIP HEK293 ENCSR080CST.ZNF639.HEK293 306 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 235 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 177 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 285 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 280 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 182 bp overlap
ZSCAN21 2 datasets
ChIP HEK293 ENCFF582WUP 365 bp overlap
ChIP HEK293 ENCSR253CKN.ZSCAN21.HEK293 349 bp overlap
ZSCAN23 2 datasets
ChIP HEK293 ENCFF127TFV 216 bp overlap
ChIP HEK293 ENCSR705ASR.ZSCAN23.HEK293 179 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 275 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 225 bp overlap