chr3 : 133,472,204 – 133,472,583
379 bp 95 TFs 1 linked gene
This 379 bp open chromatin element is linked to BFSP2 and is bound by 95 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BFSP2 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:133,467,204 – 133,477,583
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
95 transcription factors
Source
Cell type
AGO1 1 dataset
ChIP Hep-G2 ENCSR555ZMV.AGO1.Hep-G2 232 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 202 bp overlap
AR 3 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 164 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 206 bp overlap
ChIP prostate_DHT GSE61838.AR.prostate_DHT 175 bp overlap
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 225 bp overlap
ARNT::HIF1A 1 dataset
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
ASCL1 1 dataset
ChIP SCLC_ASCLP_NE GSE61197.ASCL1.SCLC_ASCLP_NE 109 bp overlap
ATXN7L3 1 dataset
ChIP HCT-116_thaps GSE121798.ATXN7L3.HCT-116_thaps 267 bp overlap
Ar 1 dataset
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 243 bp overlap
BRD4 5 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 333 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 294 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 379 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 266 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 195 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 251 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 286 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 180 bp overlap
CREB1 2 datasets
ChIP A-549 ENCSR000BRB.CREB1.A-549 119 bp overlap
ChIP MDA-MB-134-VI GSE109103.CREB1.MDA-MB-134-VI 191 bp overlap
CREB3L1 1 dataset
Motif DE_12h DE_12h-CREB3L1_MA0839.2 13 bp overlap
CREB3L4 1 dataset
Motif DE_12h DE_12h-CREB3L4_MA1474.2 10 bp overlap
CREBBP_M768 2 datasets
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
ChIP NCI-H3396_E2 GSE32349.CREBBP_M768.NCI-H3396_E2 96 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 257 bp overlap
CTCF 9 datasets
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 115 bp overlap
ChIP H1 ENCFF764RHO 159 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 136 bp overlap
ChIP fibroblast of villous mesenchyme ENCFF345VQO 189 bp overlap
ChIP gastrocnemius-medialis ENCSR355ALW.CTCF.gastrocnemius-medialis 165 bp overlap
ChIP lung ENCSR463XCZ.CTCF.lung 170 bp overlap
ChIP neural crest cell ENCFF182LWK 232 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 128 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 183 bp overlap
ChIP BLaER1 ENCFF896HSY 251 bp overlap
EGR1 2 datasets
ChIP Ishikawa ENCFF550FKT 234 bp overlap
ChIP Ishikawa ENCSR000BSQ.EGR1.Ishikawa 104 bp overlap
EGR3 2 datasets
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
Motif ES_0h ES_0h-EGR3_MA0732.2 11 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 234 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 258 bp overlap
ESR1 18 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 213 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 318 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 226 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 343 bp overlap
ChIP Ishikawa_DMSO GSE132426.ESR1.Ishikawa_DMSO 260 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 379 bp overlap
ChIP Ishikawa_E2 GSE109891.ESR1.Ishikawa_E2 93 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 297 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 361 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 307 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 260 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 271 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 146 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 225 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 190 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 373 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 277 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 375 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 226 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 305 bp overlap
Foxn1 1 dataset
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 274 bp overlap
HES7 1 dataset
Motif DE_12h DE_12h-HES7_MA0822.1 12 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 196 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 274 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 144 bp overlap
KMT2B-D 1 dataset
ChIP SW480 GSE115985.KMT2B-D.SW480 320 bp overlap
MAX 4 datasets
ChIP A-549 ENCSR000BTJ.MAX.A-549 164 bp overlap
ChIP HCT116 ENCFF810LEN 342 bp overlap
ChIP Ishikawa ENCFF064TDQ 298 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 260 bp overlap
MED26 1 dataset
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 256 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 164 bp overlap
MYOD1 2 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 333 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 213 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 207 bp overlap
NELFE 2 datasets
ChIP HCT-116 GSE132705.NELFE.HCT-116 240 bp overlap
ChIP HCT-116_KAP1-KO GSE132705.NELFE.HCT-116_KAP1-KO 312 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 159 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIB 1 dataset
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
NFIC 2 datasets
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
NFIC::TLX1 1 dataset
Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap
NR3C1 5 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 168 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 161 bp overlap
Motif DE_12h DE_12h-NR3C1_MA0113.4 15 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 142 bp overlap
ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 124 bp overlap
NRF1 8 datasets
ChIP K-562 ENCSR998AJK.NRF1.K-562 320 bp overlap
ChIP K-562 ENCSR494TDU.NRF1.K-562 316 bp overlap
ChIP K-562 ENCSR837EYC.NRF1.K-562 243 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 133 bp overlap
ChIP K-562_Ab_R157-1-3H3 GSE97661.NRF1.K-562_Ab_R157-1-3H3 225 bp overlap
ChIP K562 ENCFF689EWI 379 bp overlap
ChIP K562 ENCFF791UHF 160 bp overlap
ChIP K562 ENCFF791UHF 191 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 315 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 315 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 290 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POLR2A 4 datasets
ChIP HCT116 ENCFF508RDJ 294 bp overlap
ChIP HCT116 ENCFF849NGT 312 bp overlap
ChIP spleen ENCFF446ZGT 176 bp overlap
ChIP thyroid gland ENCFF979LRR 304 bp overlap
POU3F2 1 dataset
ChIP hiPSC_SGC0946 GSE149017.POU3F2.hiPSC_SGC0946 114 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 346 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 339 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 197 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 158 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 235 bp overlap
RELA 2 datasets
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
Motif ES_0h ES_0h-RELA_MA0107.1 10 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 305 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 365 bp overlap
RUNX1 2 datasets
ChIP AML GSE111821.RUNX1.AML 216 bp overlap
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 279 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 239 bp overlap
SCRT1 2 datasets
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
Motif ES_0h ES_0h-SCRT1_MA0743.3 10 bp overlap
SCRT2 2 datasets
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
Motif ES_0h ES_0h-SCRT2_MA0744.3 10 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 122 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 226 bp overlap
SMAD3 4 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 80 bp overlap
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 88 bp overlap
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 116 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 115 bp overlap
SMC1 1 dataset
ChIP HCT-116 GSE131606.SMC1.HCT-116 134 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 73 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 325 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 379 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 232 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 285 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 313 bp overlap
TCF12 2 datasets
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 148 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 170 bp overlap
TCF7 1 dataset
ChIP breast-organoid GSE113909.TCF7.breast-organoid 248 bp overlap
TP53 3 datasets
Motif DE_12h DE_12h-TP53_MA0106.3 18 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 250 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 324 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 248 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 231 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 376 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 281 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 248 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 378 bp overlap
ZNF189 2 datasets
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
Motif ES_0h ES_0h-ZNF189_MA1725.2 9 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 302 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 235 bp overlap
ZNF485 1 dataset
ChIP HEK293T GSE78099.ZNF485.HEK293T 140 bp overlap
ZNF711 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZNF711.HEK293T_22Rv1 273 bp overlap
ZNF93 2 datasets
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap
ZSCAN21 1 dataset
Motif DE_12h DE_12h-ZSCAN21_MA2336.1 7 bp overlap
Huangfu Lab · Publications · Resources · Contact