chr3 : 129,602,230 129,602,769
539 bp 70 TFs 6 linked genes
This 539 bp open chromatin element is linked to 6 target genes and is bound by 70 transcription factors.
Linked Genes
6 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
PLXND1 3.9 kb Proximal Proximity
IFT122 162.4 kb Distal Multiome
MBD4 162.5 kb Distal Multiome
ENSG00000290993 203.1 kb Distal Multiome
H1-10 286.2 kb Distal Multiome
TMCC1 291.1 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:129,597,230 – 129,607,769
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
ADNP 2 datasets
ChIP K-562 ENCSR440VKE.ADNP.K-562 58 bp overlap
ChIP K562 ENCFF492SKF 274 bp overlap
AR 1 dataset
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 179 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 296 bp overlap
ASCL1 3 datasets
Motif DE_48h DE_48h-ASCL1_MA1631.2 9 bp overlap
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
Motif DE_72h DE_72h-ASCL1_MA1631.2 9 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 348 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 82 bp overlap
CBX3 1 dataset
ChIP K562 ENCFF410AQU 100 bp overlap
CHD4 2 datasets
ChIP HepG2 ENCFF615GUT 226 bp overlap
ChIP K562 ENCFF933NKI 97 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 309 bp overlap
Dmrt1 1 dataset
Motif DE_60h DE_60h-Dmrt1_MA1603.2 9 bp overlap
EBF1 1 dataset
Motif DE_60h DE_60h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif DE_60h DE_60h-EBF3_MA1637.2 9 bp overlap
EOMES 4 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 201 bp overlap
ESRRA 7 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 168 bp overlap
ChIP BT-474_EGF GSE81651.ESRRA.BT-474_EGF 128 bp overlap
ChIP BT-474_HRG GSE81651.ESRRA.BT-474_HRG 106 bp overlap
ChIP K-562 ENCSR486IFJ.ESRRA.K-562 109 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 67 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 76 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 87 bp overlap
ETS1 7 datasets
ChIP HUVEC-C GSE109625.ETS1.HUVEC-C 182 bp overlap
ChIP HUVEC-C GSE93030.ETS1.HUVEC-C 182 bp overlap
ChIP HUVEC-C_12h GSE93030.ETS1.HUVEC-C_12h 228 bp overlap
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 173 bp overlap
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 224 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.ETS1.HUVEC-C_VEGF_12h 228 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 173 bp overlap
EZH2 1 dataset
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 286 bp overlap
Ebf4 1 dataset
Motif DE_60h DE_60h-Ebf4_MA2122.1 11 bp overlap
FIGLA 3 datasets
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 329 bp overlap
ChIP DE DE-FOXA2-2 345 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 274 bp overlap
ChIP DE DE-GATA4-2 182 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 259 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 228 bp overlap
HDAC2 3 datasets
ChIP A549 ENCFF195CCI 62 bp overlap
ChIP K562 ENCFF744ALD 62 bp overlap
ChIP K562 ENCFF919OMP 96 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 137 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 407 bp overlap
KAT7 2 datasets
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 240 bp overlap
ChIP WTC11 ENCFF581TPB 450 bp overlap
KDM1A 7 datasets
ChIP A-549 ENCSR639GWS.KDM1A.A-549 70 bp overlap
ChIP A549 ENCFF633QSB 86 bp overlap
ChIP HepG2 ENCFF240UWG 90 bp overlap
ChIP K-562 GSE117944.KDM1A.K-562 123 bp overlap
ChIP K562 ENCFF133OLU 95 bp overlap
ChIP K562 ENCFF934ZRG 101 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 60 bp overlap
KLF4 1 dataset
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 539 bp overlap
NFYB 1 dataset
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 283 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 245 bp overlap
PRPF4 2 datasets
ChIP Hep-G2 GSE120104.PRPF4.Hep-G2 206 bp overlap
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 187 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 153 bp overlap
RCOR2 1 dataset
ChIP HepG2 ENCFF310RFX 120 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 224 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 62 bp overlap
SMARCA4 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 432 bp overlap
SMARCA5 2 datasets
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 60 bp overlap
ChIP K562 ENCFF936KHY 68 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 385 bp overlap
SNAI1 3 datasets
Motif DE_48h DE_48h-SNAI1_MA1558.2 7 bp overlap
Motif DE_60h DE_60h-SNAI1_MA1558.2 7 bp overlap
Motif DE_72h DE_72h-SNAI1_MA1558.2 7 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 405 bp overlap
SP1 1 dataset
ChIP HepG2 ENCFF458MVB 84 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
TBX1 3 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TCF12 3 datasets
Motif DE_48h DE_48h-TCF12_MA1648.2 7 bp overlap
Motif DE_60h DE_60h-TCF12_MA1648.2 7 bp overlap
Motif DE_72h DE_72h-TCF12_MA1648.2 7 bp overlap
TCF3 3 datasets
Motif DE_48h DE_48h-TCF3_MA0522.4 7 bp overlap
Motif DE_60h DE_60h-TCF3_MA0522.4 7 bp overlap
Motif DE_72h DE_72h-TCF3_MA0522.4 7 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 79 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 337 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 348 bp overlap
THAP1 1 dataset
Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap
THRA 3 datasets
Motif DE_48h DE_48h-THRA_MA1969.2 18 bp overlap
Motif DE_60h DE_60h-THRA_MA1969.2 18 bp overlap
Motif DE_72h DE_72h-THRA_MA1969.2 18 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 158 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 332 bp overlap
ZEB1 4 datasets
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ChIP RKO GSE88734.ZEB1.RKO 292 bp overlap
ZFP57 1 dataset
Motif DE_48h DE_48h-ZFP57_MA1583.2 7 bp overlap
ZMYM3 3 datasets
ChIP HepG2 ENCFF408KTI 75 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 91 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 52 bp overlap
ZNF16 1 dataset
Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap
ZNF410 3 datasets
Motif DE_48h DE_48h-ZNF410_MA0752.2 16 bp overlap
Motif DE_60h DE_60h-ZNF410_MA0752.2 16 bp overlap
Motif DE_72h DE_72h-ZNF410_MA0752.2 16 bp overlap
ZNF444 1 dataset
ChIP MCF-7 ENCFF602QFR 73 bp overlap
ZNF708 1 dataset
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
ZNF788P 1 dataset
ChIP HepG2 ENCFF689IBZ 127 bp overlap
Zic2 1 dataset
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap