chr3 : 120,341,531 – 120,342,143
612 bp 68 TFs 2 linked genes
This 612 bp open chromatin element is linked to LRRC58 and ENSG00000293512 and is bound by 68 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LRRC58 7.2 kb Proximal Proximity
ENSG00000293512 7.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:120,336,531 – 120,347,143
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AGO2 1 dataset
ChIP HepG2 ENCFF252VFI 612 bp overlap
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 246 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 181 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 140 bp overlap
BRD4 2 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 295 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 119 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 147 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 187 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 147 bp overlap
CTCF 1 dataset
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 175 bp overlap
E2F1 2 datasets
ChIP HeLa GSE22478.E2F1.HeLa 161 bp overlap
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 275 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 97 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 181 bp overlap
ESR1 2 datasets
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 96 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 407 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 276 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 479 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 412 bp overlap
ChIP DE DE-FOXA2-2 281 bp overlap
ChIP HepG2 ENCFF570ABM 212 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 422 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 242 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 173 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 270 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 331 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 286 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 270 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 285 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 498 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 216 bp overlap
HIVEP1 1 dataset
ChIP Hep-G2 ENCSR697WMX.HIVEP1.Hep-G2 203 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 245 bp overlap
IRF4 1 dataset
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF5 1 dataset
Motif DE_12h DE_12h-IRF5_MA1420.1 14 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 127 bp overlap
KLF1 4 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap
KLF2 4 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 4 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
KLF5 4 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
KLF9 4 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 152 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 239 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 235 bp overlap
NFKBIA 1 dataset
ChIP dermal GSE30082.NFKBIA.dermal 268 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 409 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 243 bp overlap
OTX2 2 datasets
ChIP WTC11 ENCFF634NAO 200 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 188 bp overlap
PATZ1 2 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap
POLR2A 2 datasets
ChIP spleen ENCFF706IUS 160 bp overlap
ChIP spleen ENCFF706IUS 88 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 308 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 241 bp overlap
RBFOX2 4 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 325 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 325 bp overlap
ChIP K562 ENCFF967GRF 610 bp overlap
ChIP K562 ENCFF967GRF 411 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 275 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 308 bp overlap
SMAD4 1 dataset
ChIP WTC11 ENCFF195KVB 51 bp overlap
SMARCA4 1 dataset
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 181 bp overlap
SMARCC1 1 dataset
ChIP ESC S25-ESC-d0-BAF155-exp1 131 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 315 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 149 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 238 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 276 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 444 bp overlap
TEAD3 1 dataset
ChIP HepG2 ENCFF054UUL 363 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 89 bp overlap
ChIP HepG2 ENCFF250NXO 311 bp overlap
TFAP4 2 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 169 bp overlap
ChIP HepG2 ENCFF932XOY 397 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 243 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 254 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 384 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 457 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 106 bp overlap
ZEB1 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 198 bp overlap
ZNF449 2 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF460 2 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF682 2 datasets
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
Motif ES_0h ES_0h-ZNF682_MA1599.2 11 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 585 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
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