chr3 : 118,641,614 118,641,843
229 bp 109 TFs 0 linked genes
This 229 bp open chromatin element has no linked target genes and is bound by 109 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:118,636,614 – 118,646,843
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
109 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP GSE148358.AR.VCaP 138 bp overlap
ARNTL 1 dataset
ChIP U2OS_trough_DMSO GSE85096.ARNTL.U2OS_trough_DMSO 87 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 229 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 229 bp overlap
Atoh1 1 dataset
Motif ES_0h ES_0h-Atoh1_MA0461.3 8 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 229 bp overlap
BMI1 2 datasets
ChIP GM12878 ENCSR469WII.BMI1.GM12878 229 bp overlap
ChIP MCF-7 ENCSR966YYJ.BMI1.MCF-7 229 bp overlap
BRD4 8 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 78 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 229 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 229 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 104 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 144 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 186 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 229 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 229 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 136 bp overlap
Bach1::Mafk 2 datasets
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
Motif ES_0h ES_0h-Bach1Mafk_MA0591.2 12 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 54 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 229 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 226 bp overlap
COMMD3-BMI1,BMI1 2 datasets
ChIP GM12878 ENCFF249AMT 229 bp overlap
ChIP MCF-7 ENCFF570JPP 210 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 229 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 116 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 103 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 229 bp overlap
ELF3 1 dataset
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 173 bp overlap
EOMES 1 dataset
Motif ES_0h ES_0h-EOMES_MA0800.2 9 bp overlap
EP300 6 datasets
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 124 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 161 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 180 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 229 bp overlap
ChIP neural cell ENCFF442QNK 229 bp overlap
ChIP neural cell ENCFF442QNK 229 bp overlap
ERF::FOXI1 3 datasets
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
Motif ES_0h ES_0h-ERFFOXI1_MA1935.2 10 bp overlap
Motif ES_0h ES_0h-ERFFOXI1_MA1935.2 10 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 130 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 3 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXO1 3 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap
EZH2 3 datasets
ChIP Karpas-422_DMSO-D8 GSE134136.EZH2.Karpas-422_DMSO-D8 178 bp overlap
ChIP OCI-Ly1 GSE45982.EZH2.OCI-Ly1 119 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 60 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FOXE1 1 dataset
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 184 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCFF764OZD 195 bp overlap
GRHL2 1 dataset
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 160 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 178 bp overlap
IKZF2 2 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
KDM1A 6 datasets
ChIP OCI-Ly1 GSE107920.KDM1A.OCI-Ly1 128 bp overlap
ChIP OCI-Ly1_si GSE107920.KDM1A.OCI-Ly1_si 93 bp overlap
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 229 bp overlap
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 206 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 229 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 199 bp overlap
MAF 1 dataset
Motif ES_0h ES_0h-MAF_MA1520.2 13 bp overlap
MAF::NFE2 2 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap
MAFA 1 dataset
Motif ES_0h ES_0h-MAFA_MA1521.2 13 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 105 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 2 datasets
Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap
Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 103 bp overlap
ChIP H1 ENCFF914VQY 229 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 210 bp overlap
MXI1 7 datasets
Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap
ChIP H1 ENCFF963FZS 229 bp overlap
ChIP SK-N-SH ENCFF746HVJ 199 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 229 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 229 bp overlap
ChIP neural ENCSR934NHU.MXI1.neural 229 bp overlap
ChIP neural cell ENCFF623HQN 229 bp overlap
MYB 1 dataset
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 217 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 209 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 219 bp overlap
Mafg 2 datasets
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap
Msgn1 1 dataset
Motif ES_0h ES_0h-Msgn1_MA1524.3 10 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 187 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 209 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 53 bp overlap
Nfe2l2 2 datasets
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 186 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 154 bp overlap
POU2F2 3 datasets
ChIP GM12878 ENCFF207RKY 114 bp overlap
ChIP GM12891 ENCFF166YPP 229 bp overlap
ChIP GM12891 ENCSR000BII.POU2F2.GM12891 201 bp overlap
POU2F3 2 datasets
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 210 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 205 bp overlap
POU5F1 1 dataset
ChIP BG03 GSE21614.POU5F1.BG03 202 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 141 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 229 bp overlap
ChIP neural cell ENCFF564MOT 229 bp overlap
REST 3 datasets
ChIP hippocampus GSE144226.REST.hippocampus 181 bp overlap
ChIP neural ENCSR000BTV.REST.neural 229 bp overlap
ChIP neural cell ENCFF882LXX 229 bp overlap
RFX1 10 datasets
Motif ES_0h ES_0h-RFX1_MA0509.3 16 bp overlap
ChIP HepG2 ENCFF144SCF 229 bp overlap
ChIP K-562 ENCSR968GIB.RFX1.K-562 229 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 229 bp overlap
ChIP K562 ENCFF421AVO 229 bp overlap
ChIP K562 ENCFF809XVG 229 bp overlap
ChIP MCF-7 ENCFF782EZS 229 bp overlap
ChIP MCF-7 ENCFF973QAD 229 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 229 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 229 bp overlap
RFX2 1 dataset
Motif ES_0h ES_0h-RFX2_MA0600.3 14 bp overlap
RFX3 2 datasets
Motif ES_0h ES_0h-RFX3_MA0798.3 16 bp overlap
ChIP Hep-G2 ENCSR633OVO.RFX3.Hep-G2 153 bp overlap
RFX4 2 datasets
Motif DE_12h DE_12h-RFX4_MA0799.3 13 bp overlap
Motif ES_0h ES_0h-RFX4_MA0799.3 13 bp overlap
RFX5 3 datasets
Motif ES_0h ES_0h-RFX5_MA0510.3 14 bp overlap
ChIP SK-N-SH ENCFF755HLO 225 bp overlap
ChIP SK-N-SH ENCSR000EHY.RFX5.SK-N-SH 169 bp overlap
RFX7 3 datasets
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
Motif ES_0h ES_0h-RFX7_MA1554.2 8 bp overlap
Rfx6 3 datasets
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
Motif ES_0h ES_0h-Rfx6_MA1724.2 9 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 190 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 220 bp overlap
ChIP H1 ENCFF896IJG 229 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 229 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 190 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 229 bp overlap
SMARCA4 3 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 229 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 229 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 220 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 130 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 229 bp overlap
ChIP neural cell ENCFF795YGY 154 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 133 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 229 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 183 bp overlap
SPDEF 1 dataset
Motif ES_0h ES_0h-SPDEF_MA0686.2 10 bp overlap
STAT1 1 dataset
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 124 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 86 bp overlap
TBR1 1 dataset
Motif ES_0h ES_0h-TBR1_MA0802.2 9 bp overlap
TBX18 1 dataset
Motif ES_0h ES_0h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif ES_0h ES_0h-TBX2_MA0688.2 9 bp overlap
ChIP Kelly GSE94822.TBX2.Kelly 156 bp overlap
TBX20 1 dataset
Motif ES_0h ES_0h-TBX20_MA0689.1 11 bp overlap
TBX3 1 dataset
Motif ES_0h ES_0h-TBX3_MA1566.3 9 bp overlap
TFAP2B 2 datasets
ChIP SK-N-SH ENCFF869XXQ 112 bp overlap
ChIP SK-N-SH ENCFF869XXQ 133 bp overlap
TP53 1 dataset
Motif ES_0h ES_0h-TP53_MA0106.3 18 bp overlap
TP63 2 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 214 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 216 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 145 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 78 bp overlap
Tbx6 1 dataset
Motif ES_0h ES_0h-Tbx6_MA1567.3 9 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 115 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 226 bp overlap
ZNF175 2 datasets
Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 53 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 79 bp overlap
ZNF547 1 dataset
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
ZNF784 1 dataset
Motif ES_0h ES_0h-ZNF784_MA1717.2 8 bp overlap
Zfp335 1 dataset
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap