chr3 : 109,336,338 – 109,336,883
545 bp 68 TFs 2 linked genes
This 545 bp open chromatin element is linked to DPPA4 and ENSG00000289358 and is bound by 68 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DPPA4 638 bp At TSS Proximity
ENSG00000289358 886 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:109,331,338 – 109,341,883
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 445 bp overlap
AR 2 datasets
ChIP MCF-7 GSE48930.AR.MCF-7 152 bp overlap
ChIP MCF-7 GSE48930.AR.MCF-7 144 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 145 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 162 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 117 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 426 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 214 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34pos GSE84677.BCL11B.thymus_CD34pos 95 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 415 bp overlap
BRD3 2 datasets
ChIP H-1 GSE126661.BRD3.H-1 504 bp overlap
ChIP H-1_DE GSE126661.BRD3.H-1_DE 364 bp overlap
CHD1 4 datasets
ChIP H1 ENCFF128BID 310 bp overlap
ChIP H1 ENCFF998XEK 545 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 545 bp overlap
ChIP WA01 ENCSR000EBU.CHD1.WA01 545 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 507 bp overlap
DMRTA2 1 dataset
Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 216 bp overlap
ELF4 2 datasets
ChIP WTC11 ENCFF789GJO 157 bp overlap
ChIP WTC11 ENCFF789GJO 369 bp overlap
ESR1 1 dataset
ChIP endometrioid-adenocarcinoma_tumor_F GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_F 145 bp overlap
EZH2 1 dataset
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 212 bp overlap
FEZF2 3 datasets
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_60h DE_60h-FEZF2_MA2341.1 8 bp overlap
Motif DE_72h DE_72h-FEZF2_MA2341.1 8 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 144 bp overlap
FOXA2 1 dataset
ChIP liver ENCSR310NYI.FOXA2.liver 207 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 337 bp overlap
GTF2I 1 dataset
ChIP WTC11 ENCFF255XXZ 79 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 198 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF449HPV 172 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 163 bp overlap
IRF2 1 dataset
ChIP CD34_ADULT GSE70660.IRF2.CD34_ADULT 207 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 134 bp overlap
JUND 1 dataset
ChIP liver ENCSR196HGZ.JUND.liver 308 bp overlap
KAT7 1 dataset
ChIP WTC11 ENCFF581TPB 347 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 155 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 112 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 159 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 152 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 133 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 372 bp overlap
NR2F2 1 dataset
ChIP liver ENCSR338MMB.NR2F2.liver 184 bp overlap
OSR1 2 datasets
Motif DE_48h DE_48h-OSR1_MA1542.2 8 bp overlap
Motif DE_60h DE_60h-OSR1_MA1542.2 8 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 274 bp overlap
POLR2A 3 datasets
ChIP GM23338 ENCFF450WCS 379 bp overlap
ChIP H1 ENCFF566JSR 445 bp overlap
ChIP right lobe of liver ENCFF026NCK 406 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 403 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 294 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 505 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 543 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 446 bp overlap
ChIP liver ENCFF522JHE 306 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 434 bp overlap
ChIP H1 ENCFF905HFL 162 bp overlap
REST 3 datasets
ChIP liver ENCFF240FWT 399 bp overlap
ChIP liver ENCSR893QWP.REST.liver 515 bp overlap
ChIP liver ENCSR867WPH.REST.liver 382 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 221 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 221 bp overlap
RXRA 1 dataset
ChIP liver ENCFF077DAP 370 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 545 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 460 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 251 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 200 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 511 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 191 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 215 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 338 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 335 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 382 bp overlap
SP5 3 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap
Stat6 1 dataset
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
TAF1 5 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 202 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 240 bp overlap
ChIP liver ENCFF610UQP 394 bp overlap
ChIP liver ENCSR016BMM.TAF1.liver 184 bp overlap
ChIP liver ENCSR016BMM.TAF1.liver 305 bp overlap
TAF7 2 datasets
ChIP H1 ENCFF061XZZ 314 bp overlap
ChIP WA01 ENCSR000BLU.TAF7.WA01 545 bp overlap
TBP 7 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 523 bp overlap
ChIP hESC GSE122298.TBP.hESC 207 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 544 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 545 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 296 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 180 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 230 bp overlap
TBX18 3 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
Motif DE_72h DE_72h-TBX18_MA1565.2 9 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 249 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_48h DE_48h-TFAP4ETV1_MA1966.2 13 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_48h DE_48h-TFAP4FLI1_MA1967.2 14 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 78 bp overlap
ChIP liver ENCFF400MBC 234 bp overlap
ChIP liver ENCFF515BWJ 437 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 545 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 63 bp overlap
ZNF213 3 datasets
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
Motif DE_72h DE_72h-ZNF213_MA2121.1 12 bp overlap
ZNF257 3 datasets
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF263 3 datasets
Motif DE_48h DE_48h-ZNF263_MA0528.3 7 bp overlap
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
Motif DE_72h DE_72h-ZNF263_MA0528.3 7 bp overlap
ZNF425 1 dataset
ChIP WTC11 ENCFF359IXT 301 bp overlap
ZNF610 2 datasets
Motif DE_48h DE_48h-ZNF610_MA1713.2 10 bp overlap
Motif DE_60h DE_60h-ZNF610_MA1713.2 10 bp overlap
ZNF93 2 datasets
Motif DE_48h DE_48h-ZNF93_MA1721.2 14 bp overlap
Motif DE_60h DE_60h-ZNF93_MA1721.2 14 bp overlap
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