chr3 : 98,722,089 98,722,808
719 bp 108 TFs 2 linked genes
This 719 bp open chromatin element is linked to ST3GAL6 and ST3GAL6-AS1 and is bound by 108 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ST3GAL6 9.6 kb Proximal Proximity
ST3GAL6-AS1 9.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:98,717,089 – 98,727,808
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 399 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 181 bp overlap
Arid3a 2 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 169 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 269 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 215 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 172 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 538 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 363 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 107 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 164 bp overlap
FOXA1 9 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 141 bp overlap
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 385 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 187 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 192 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 128 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 104 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 138 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 135 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 150 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 299 bp overlap
ChIP DE DE-FOXA2-2 285 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 124 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 214 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 377 bp overlap
GATA1 3 datasets
Motif DE_12h DE_12h-GATA1_MA0035.5 7 bp overlap
Motif DE_36h DE_36h-GATA1_MA0035.5 7 bp overlap
ChIP erythroid-progenitor GSE124163.GATA1.erythroid-progenitor 184 bp overlap
GATA3 4 datasets
ChIP Kelly GSE65664.GATA3.Kelly 161 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 444 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 318 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 228 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 474 bp overlap
ChIP foregut GSE117136.GATA4.foregut 452 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-2 266 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 591 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 719 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 641 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 717 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 647 bp overlap
HOXA10 1 dataset
Motif DE_12h DE_12h-HOXA10_MA0899.2 9 bp overlap
HOXB13 1 dataset
Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap
HOXD9 1 dataset
Motif DE_12h DE_12h-HOXD9_MA0913.3 9 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
Hoxa13 1 dataset
Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap
Hoxd13 1 dataset
Motif DE_12h DE_12h-Hoxd13_MA0909.4 7 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 266 bp overlap
KLF1 3 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap
KLF10 3 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap
KLF11 3 datasets
Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap
Motif DE_36h DE_36h-KLF11_MA1512.2 10 bp overlap
Motif ES_0h ES_0h-KLF11_MA1512.2 10 bp overlap
KLF16 3 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
Motif ES_0h ES_0h-KLF16_MA0741.1 11 bp overlap
KLF2 3 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap
KLF4 7 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 428 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 238 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 215 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 157 bp overlap
KLF5 4 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap
ChIP HEK293_E419K GSE88976.KLF5.HEK293_E419K 242 bp overlap
KLF6 3 datasets
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
Motif DE_36h DE_36h-KLF6_MA1517.2 9 bp overlap
Motif ES_0h ES_0h-KLF6_MA1517.2 9 bp overlap
KLF9 3 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif ES_0h ES_0h-KLF9_MA1107.3 11 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 220 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 573 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 378 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 200 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 713 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 523 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 585 bp overlap
ChIP hESC GSE18292.NANOG.hESC 330 bp overlap
ChIP hESC GSE20650.NANOG.hESC 202 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 220 bp overlap
NR3C1 1 dataset
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 171 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
PHOX2B 1 dataset
Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 3 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 3 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU3F2 3 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU3F3 3 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
POU3F4 3 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU5F1 9 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 536 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 719 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 296 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 338 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 156 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 620 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 608 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 157 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 347 bp overlap
POU5F1B 3 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_36h DE_36h-POU5F1B_MA0792.1 9 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 360 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 297 bp overlap
PROP1 1 dataset
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 337 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 241 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 267 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 402 bp overlap
SATB1 3 datasets
Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap
Motif DE_36h DE_36h-SATB1_MA1963.2 7 bp overlap
Motif ES_0h ES_0h-SATB1_MA1963.2 7 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 303 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 478 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 507 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 324 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 503 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 325 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 486 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 491 bp overlap
SOX10 2 datasets
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 396 bp overlap
SOX4 2 datasets
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
Motif DE_12h DE_12h-SOX8_MA0868.3 7 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
STAT1 2 datasets
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Motif DE_36h DE_36h-STAT1_MA0137.4 9 bp overlap
STAT3 2 datasets
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Motif DE_36h DE_36h-STAT3_MA0144.3 9 bp overlap
Six3 2 datasets
Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap
Motif DE_36h DE_36h-Six3_MA0631.2 11 bp overlap
Sox11 2 datasets
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
Sox17 2 datasets
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Motif DE_36h DE_36h-Sox17_MA0078.3 10 bp overlap
Sox5 2 datasets
Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap
Motif DE_36h DE_36h-Sox5_MA0087.3 8 bp overlap
Sox6 2 datasets
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
Motif DE_36h DE_36h-Sox7_MA2095.1 10 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Stat4 2 datasets
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
Stat5a 2 datasets
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Motif DE_36h DE_36h-Stat5a_MA1624.2 9 bp overlap
Stat5b 2 datasets
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
Motif DE_36h DE_36h-Stat5b_MA1625.2 9 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 4 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif DE_36h DE_36h-TCF7L2_MA0523.2 9 bp overlap
ChIP HEK293 ENCFF513JQN 468 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 268 bp overlap
TFAP2A 4 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_36h DE_36h-TFAP2A_MA0810.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2A_MA0810.2 11 bp overlap
ChIP WA09 GSE105081.TFAP2A.WA09 180 bp overlap
TFAP2B 3 datasets
Motif DE_12h DE_12h-TFAP2B_MA0811.2 11 bp overlap
Motif DE_36h DE_36h-TFAP2B_MA0811.2 11 bp overlap
Motif ES_0h ES_0h-TFAP2B_MA0811.2 11 bp overlap
TFAP2C 5 datasets
Motif DE_12h DE_12h-TFAP2C_MA0524.3 11 bp overlap
Motif DE_36h DE_36h-TFAP2C_MA0524.3 11 bp overlap
Motif ES_0h ES_0h-TFAP2C_MA0524.3 11 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 719 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 719 bp overlap
Wt1 3 datasets
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
ZKSCAN5 3 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF257 6 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
Motif ES_0h ES_0h-ZNF281_MA1630.3 10 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_36h DE_36h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 264 bp overlap