chr3 : 55,127,603 55,128,290
687 bp 77 TFs 0 linked genes
This 687 bp open chromatin element has no linked target genes and is bound by 77 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:55,122,603 – 55,133,290
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 60 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 186 bp overlap
AR 1 dataset
ChIP prostate GSE56288.AR.prostate 65 bp overlap
ATF3 2 datasets
ChIP H1 ENCFF852GZY 179 bp overlap
ChIP WTC11 ENCFF519QFH 249 bp overlap
BRCA1 1 dataset
ChIP MCF-10A GSE40591.BRCA1.MCF-10A 86 bp overlap
BRD4 14 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 228 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 94 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 139 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 89 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 206 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 181 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 63 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 162 bp overlap
ChIP SUM159PT_DMSO_72h GSE87418.BRD4.SUM159PT_DMSO_72h 166 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 72 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 246 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 199 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 63 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 84 bp overlap
CEBPB 2 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 52 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 160 bp overlap
CHD2 2 datasets
ChIP HeLa-S3 ENCFF078QRQ 155 bp overlap
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 146 bp overlap
CHD7 3 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 212 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 462 bp overlap
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 64 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF364PUR 425 bp overlap
ChIP BLaER1 ENCFF460KDD 326 bp overlap
EP300 4 datasets
ChIP HeLa-S3 ENCFF089VPQ 121 bp overlap
ChIP HeLa-S3 ENCFF245KNK 197 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 287 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 158 bp overlap
ESR1 12 datasets
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 201 bp overlap
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 205 bp overlap
ChIP MCF-7_E2 ERP000901.ESR1.MCF-7_E2 111 bp overlap
ChIP MCF-7_E2-10min-ERalpha GSE94023.ESR1.MCF-7_E2-10min-ERalpha 208 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 254 bp overlap
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 169 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 248 bp overlap
ChIP MCF-7_LTED_E2 GSE86538.ESR1.MCF-7_LTED_E2 212 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 417 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 394 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 406 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 292 bp overlap
EZH2 4 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 206 bp overlap
ChIP GM23248 ENCFF506FWX 58 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 294 bp overlap
ChIP neural progenitor cell ENCFF018MKA 655 bp overlap
FOSL2 3 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 284 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 128 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 172 bp overlap
FOXA1 2 datasets
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 177 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 57 bp overlap
FOXA2 8 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 129 bp overlap
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 145 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 110 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 127 bp overlap
ChIP BJ1-hTERT_MimosinePlus GSE90454.FOXA2.BJ1-hTERT_MimosinePlus 107 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 106 bp overlap
ChIP DE DE-FOXA2-1 687 bp overlap
ChIP DE DE-FOXA2-2 674 bp overlap
FOXP1 2 datasets
ChIP H9 GSE31006.FOXP1.H9 312 bp overlap
ChIP H9 GSE31006.FOXP1.H9 145 bp overlap
FOXP2 2 datasets
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 129 bp overlap
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 158 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 134 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 54 bp overlap
GATA4 3 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 160 bp overlap
ChIP DE DE-GATA4-1 645 bp overlap
ChIP DE DE-GATA4-2 547 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 472 bp overlap
ChIP DE DE-GATA6-2 540 bp overlap
GPS2 1 dataset
ChIP hMADS_D0_E GSE152517.GPS2.hMADS_D0_E 81 bp overlap
HOXB13 1 dataset
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 94 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 60 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 158 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 64 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 164 bp overlap
MAFK 1 dataset
ChIP HeLa-S3 ENCFF304XGR 134 bp overlap
MAX 2 datasets
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 100 bp overlap
ChIP HeLa-S3 ENCSR000ECN.MAX.HeLa-S3 71 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 472 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 113 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 333 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 61 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 62 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 162 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 388 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 436 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 214 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 78 bp overlap
PGR 1 dataset
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 80 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 107 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 255 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 117 bp overlap
RAD21 1 dataset
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 142 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 260 bp overlap
RELA 2 datasets
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 209 bp overlap
ChIP MCF-7_Veh GSE67295.RELA.MCF-7_Veh 189 bp overlap
REST 1 dataset
ChIP neural cell ENCFF882LXX 56 bp overlap
RXR 2 datasets
ChIP LS180 GSE31939.RXR.LS180 112 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 170 bp overlap
RXRA 2 datasets
ChIP H1 ENCFF570NHK 201 bp overlap
ChIP WA01 ENCSR000BJW.RXRA.WA01 172 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 134 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 466 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 500 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 186 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 202 bp overlap
SMARCA4 6 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 270 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 279 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 390 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 339 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 183 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 151 bp overlap
SMARCC1 3 datasets
ChIP HeLa-S3 ENCFF971JGA 595 bp overlap
ChIP HeLa-S3 ENCSR000EDM.SMARCC1.HeLa-S3 687 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 133 bp overlap
SNAI2 1 dataset
ChIP RD GSE137168.SNAI2.RD 218 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 686 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 476 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 131 bp overlap
STAT3 3 datasets
ChIP HCC1143_EtOH GSE85579.STAT3.HCC1143_EtOH 89 bp overlap
ChIP HeLa-S3 ENCFF655DGU 119 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 151 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 127 bp overlap
TCF7L2 2 datasets
ChIP HeLa-S3 ENCFF673QAB 355 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 262 bp overlap
TEAD1 1 dataset
ChIP H69 GSE62274.TEAD1.H69 141 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 229 bp overlap
TWIST1 2 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 77 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 77 bp overlap
VDR 1 dataset
ChIP THP-1_1d_1-25-OH-2D3 GSE89431.VDR.THP-1_1d_1-25-OH-2D3 231 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 219 bp overlap
ZFP64 1 dataset
ChIP HEK293 GSE76494.ZFP64.HEK293 164 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 183 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 286 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 206 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 158 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 99 bp overlap