chr2 : 178,836,854 178,837,449
595 bp 69 TFs 2 linked genes
This 595 bp open chromatin element is linked to RNU7-104P and TTN and is bound by 69 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
RNU7-104P 5.4 kb Proximal Proximity
TTN 6.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:178,831,854 – 178,842,449
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP GSE80256.AR.LNCaP 271 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 262 bp overlap
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 335 bp overlap
BRD4 4 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 311 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 123 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 595 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 301 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 378 bp overlap
CHD4 2 datasets
ChIP SCMC GSE155861.CHD4.SCMC 304 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 56 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 55 bp overlap
CTCF 5 datasets
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 127 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 282 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 174 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 365 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 276 bp overlap
Dux 2 datasets
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 156 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 176 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF829RWA 318 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 394 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 431 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 128 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 425 bp overlap
FERD3L 2 datasets
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
Motif DE_36h DE_36h-FERD3L_MA1485.1 14 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 287 bp overlap
GATA1::TAL1 2 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_36h DE_36h-GATA1TAL1_MA0140.3 17 bp overlap
GATA2 7 datasets
ChIP SH-SY5Y ENCFF485YIB 375 bp overlap
ChIP SH-SY5Y ENCFF485YIB 403 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 595 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 437 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 397 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 63 bp overlap
GATA3 2 datasets
ChIP Kelly GSE94822.GATA3.Kelly 595 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 337 bp overlap
GATA4 7 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 211 bp overlap
ChIP DE DE-GATA4-1 338 bp overlap
ChIP DE DE-GATA4-2 401 bp overlap
ChIP G296S GSE85628.GATA4.G296S 307 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 307 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 243 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 236 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 368 bp overlap
ChIP DE DE-GATA6-2 406 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 563 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 549 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 484 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 564 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 575 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 563 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 196 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 384 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 362 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 526 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 595 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 316 bp overlap
IKZF2 1 dataset
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 366 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 410 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 159 bp overlap
MED1 5 datasets
ChIP G296S GSE85628.MED1.G296S 292 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 292 bp overlap
ChIP G296S_4 GSE85628.MED1.G296S_4 294 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 446 bp overlap
ChIP cardiomyocyte_7 GSE85628.MED1.cardiomyocyte_7 478 bp overlap
MXI1 3 datasets
ChIP SK-N-SH ENCFF746HVJ 393 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 379 bp overlap
ChIP neural cell ENCFF623HQN 587 bp overlap
MYCN 5 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 313 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 595 bp overlap
ChIP Kelly GSE80151.MYCN.Kelly 280 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 580 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 145 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 318 bp overlap
NANOG 3 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 298 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 187 bp overlap
NCOR1 1 dataset
ChIP HEK293T_SICTR GSE35197.NCOR1.HEK293T_SICTR 94 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 338 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 160 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 336 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 87 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 558 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 297 bp overlap
ChIP neuroblastoma GSE115862.RAD21.neuroblastoma 251 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 592 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 163 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 409 bp overlap
REST 3 datasets
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 114 bp overlap
ChIP neural ENCSR000BTV.REST.neural 188 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 239 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 223 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 180 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 233 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif DE_36h DE_36h-SIX1_MA1118.2 9 bp overlap
SIX2 2 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 368 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 296 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 189 bp overlap
SPI1 1 dataset
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 105 bp overlap
STAT5B 1 dataset
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 210 bp overlap
Six3 1 dataset
Motif DE_36h DE_36h-Six3_MA0631.2 11 bp overlap
Six4 2 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif DE_36h DE_36h-Six4_MA2001.2 7 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 265 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 327 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 247 bp overlap
TBX5 2 datasets
ChIP G296S GSE85628.TBX5.G296S 395 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 395 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 82 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_36h DE_36h-TFAP2A_MA0003.5 9 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_36h DE_36h-TFAP2C_MA0814.3 9 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 167 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 214 bp overlap
ZFP14 2 datasets
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
ZNF273 1 dataset
ChIP HEK293T GSE78099.ZNF273.HEK293T 184 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif DE_36h DE_36h-ZNF85_MA1720.2 12 bp overlap
ZNF93 2 datasets
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif DE_36h DE_36h-ZNF93_MA1721.2 14 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap