chrX : 109,281,530 109,282,061
531 bp 79 TFs 0 linked genes
This 531 bp open chromatin element has no linked target genes and is bound by 79 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:109,276,530 – 109,287,061
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
ARID3A 3 datasets
ChIP GM12878 ENCFF006WWZ 351 bp overlap
ChIP GM12878 ENCFF006WWZ 214 bp overlap
ChIP GM12878 ENCSR778UBR.ARID3A.GM12878 375 bp overlap
ATF2 1 dataset
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 102 bp overlap
BRD4 9 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 176 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 131 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 142 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 92 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 157 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 215 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 221 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 308 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 336 bp overlap
CDK8 2 datasets
ChIP SET-2 GSE65138.CDK8.SET-2 211 bp overlap
ChIP SW480 GSE53602.CDK8.SW480 211 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 192 bp overlap
CDX2 3 datasets
ChIP LS180 GSE31939.CDX2.LS180 167 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 144 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 188 bp overlap
CHD4 1 dataset
ChIP HaCaT GSE139685.CHD4.HaCaT 180 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 389 bp overlap
DMRTA1 1 dataset
Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap
DMRTA2 1 dataset
Motif DE_36h DE_36h-DMRTA2_MA1478.2 6 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 408 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 453 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 184 bp overlap
ERG 12 datasets
ChIP HUVEC-C GSE124891.ERG.HUVEC-C 241 bp overlap
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 227 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 348 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 381 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 187 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 229 bp overlap
ChIP aortic-endothelial-cell_D38 GSE139377.ERG.aortic-endothelial-cell_D38 166 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 268 bp overlap
ChIP aortic-endothelial-cell_D40 GSE139377.ERG.aortic-endothelial-cell_D40 168 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 222 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 220 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 167 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 211 bp overlap
ETV1 1 dataset
ChIP COLO-800 GSE80443.ETV1.COLO-800 416 bp overlap
ETV6 2 datasets
ChIP GM12878 GSE97661.ETV6.GM12878 147 bp overlap
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 85 bp overlap
FLI1 5 datasets
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 390 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 378 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 267 bp overlap
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 276 bp overlap
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 257 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 236 bp overlap
FOXA1 2 datasets
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 171 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 216 bp overlap
FOXM1 2 datasets
ChIP GM12878 ENCFF264DJE 378 bp overlap
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 209 bp overlap
GATA1 2 datasets
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 124 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
GATA2 3 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 206 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 421 bp overlap
ChIP TSU-1621MT GSE60477.GATA2.TSU-1621MT 218 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 449 bp overlap
ChIP DE DE-GATA4-2 496 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 318 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 301 bp overlap
ChIP KATO-III GSE51705.GATA4.KATO-III 218 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 131 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 218 bp overlap
ChIP foregut GSE117136.GATA4.foregut 497 bp overlap
GATA6 14 datasets
ChIP AGS GSE51705.GATA6.AGS 395 bp overlap
ChIP DE DE-GATA6-1 519 bp overlap
ChIP DE DE-GATA6-2 513 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 478 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 470 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 438 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 335 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 203 bp overlap
ChIP KATO-III GSE51705.GATA6.KATO-III 290 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 302 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 531 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 448 bp overlap
ChIP foregut GSE117136.GATA6.foregut 441 bp overlap
HMBOX1 1 dataset
Motif DE_36h DE_36h-HMBOX1_MA0895.2 7 bp overlap
HNF1A 1 dataset
ChIP NY15 GSE108150.HNF1A.NY15 291 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 166 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 181 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 531 bp overlap
HOXB13 1 dataset
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 153 bp overlap
IKZF1 4 datasets
ChIP GM12878 ENCFF616FJX 273 bp overlap
ChIP GM12878 ENCFF753XDO 191 bp overlap
ChIP GM12878 ENCFF824TGK 183 bp overlap
ChIP GM12878 ENCFF824TGK 129 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 327 bp overlap
ChIP GM12878 ENCFF918AID 283 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 296 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 160 bp overlap
JMJD1C 3 datasets
ChIP HL-60 GSE63484.JMJD1C.HL-60 183 bp overlap
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 177 bp overlap
ChIP THP-1 GSE63484.JMJD1C.THP-1 141 bp overlap
JUN 1 dataset
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 139 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 143 bp overlap
ChIP HAEC GSE89970.JUNB.HAEC 198 bp overlap
KDM1A 1 dataset
ChIP Kasumi-1_DMSO GSE71739.KDM1A.Kasumi-1_DMSO 208 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 239 bp overlap
LMO2 1 dataset
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 231 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 229 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 76 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 322 bp overlap
MTA2 3 datasets
ChIP GM12878 ENCFF615CWQ 301 bp overlap
ChIP GM12878 ENCFF615CWQ 102 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 235 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 231 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 321 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 300 bp overlap
NFYB 1 dataset
Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap
NIPBL 1 dataset
ChIP GM12878 GSE93080.NIPBL.GM12878 69 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 219 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 135 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 267 bp overlap
POLR2A 3 datasets
ChIP stomach ENCFF278MYS 241 bp overlap
ChIP stomach ENCFF607ZPU 325 bp overlap
ChIP stomach ENCFF820WZN 174 bp overlap
POU5F1 3 datasets
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 385 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 268 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 300 bp overlap
RAD21 6 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 521 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 331 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 314 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 176 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.RAD21.THP-1_Pam3csk-180m-Flavo-060m 233 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 153 bp overlap
RELA 37 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 400 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 358 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 362 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 465 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 341 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 413 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 272 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 265 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 369 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 340 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 277 bp overlap
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 268 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 309 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 172 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 341 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 382 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 368 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 344 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 306 bp overlap
ChIP aortic-endothelial-cell_IL1B_D24 GSE139377.RELA.aortic-endothelial-cell_IL1B_D24 169 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 339 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 168 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 332 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 256 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 230 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 206 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 313 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 429 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 289 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 295 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 168 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 223 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 231 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 260 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 179 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 267 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 350 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 352 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 301 bp overlap
RNF2 1 dataset
ChIP ME-1_KD GSE128771.RNF2.ME-1_KD 329 bp overlap
RUNX1 6 datasets
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 225 bp overlap
ChIP Kasumi-1 GSE45738.RUNX1.Kasumi-1 316 bp overlap
ChIP Kasumi-1 GSE62847.RUNX1.Kasumi-1 322 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 360 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.RUNX1.ME-1_CBFB-MYH11-KD 268 bp overlap
ChIP ME-1_Con GSE128771.RUNX1.ME-1_Con 268 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_shTAF1-AE GSE115115.RUNX1T1.Kasumi-1_shTAF1-AE 218 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 123 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 141 bp overlap
SMAD3 1 dataset
ChIP hESC GSE29422.SMAD3.hESC 152 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 235 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 191 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 174 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 334 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 358 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 272 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 265 bp overlap
SPI1 7 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 119 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 93 bp overlap
ChIP GM12878 ENCFF134LCP 182 bp overlap
ChIP GM12891 ENCFF563IUT 153 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 127 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 268 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 107 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 180 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 216 bp overlap
STAT3 1 dataset
ChIP HCC1187 GSE152203.STAT3.HCC1187 333 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 136 bp overlap
TAL1 3 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 292 bp overlap
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 160 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 193 bp overlap
TBX21 3 datasets
ChIP GM12878 ENCFF951HUW 292 bp overlap
ChIP GM12878 ENCFF951HUW 91 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 243 bp overlap
TCF12 3 datasets
ChIP GM12878 ENCFF433DMU 176 bp overlap
ChIP GM12878 ENCSR725VFL.TCF12.GM12878 128 bp overlap
ChIP ME-1 GSE46044.TCF12.ME-1 223 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 133 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 119 bp overlap