chrX : 107,355,186 107,356,118
932 bp 63 TFs 4 linked genes
This 932 bp open chromatin element is linked to 4 target genes and is bound by 63 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
DNAJA1P3 2.3 kb Proximal Proximity
RBM41 236.8 kb Distal Multiome
PRPS1 272.8 kb Distal Multiome
MORC4 355.6 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:107,350,186 – 107,361,118
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 407 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 158 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 315 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF836SSR 177 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 208 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 228 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 288 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 329 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 92 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 207 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 162 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 263 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 442 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 433 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 262 bp overlap
ELK4 1 dataset
ChIP HEK293 ENCFF309WLN 355 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 516 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 214 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 113 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 301 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 716 bp overlap
ChIP DE DE-FOXA2-2 707 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 259 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 533 bp overlap
ChIP DE DE-GATA4-2 637 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 559 bp overlap
ChIP DE DE-GATA6-2 751 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 580 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 510 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 272 bp overlap
GLIS1 3 datasets
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCFF299RSE 457 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 504 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 492 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 204 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 225 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 457 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 289 bp overlap
LEF1 2 datasets
ChIP hESC GSE64758.LEF1.hESC 246 bp overlap
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 204 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 257 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 125 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 616 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 324 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 259 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 642 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 453 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 502 bp overlap
ChIP hESC GSE18292.NANOG.hESC 99 bp overlap
ChIP hESC GSE20650.NANOG.hESC 151 bp overlap
ChIP hESC GSE18292.NANOG.hESC 96 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 282 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 230 bp overlap
OSR2 1 dataset
ChIP HEK293 GSE76494.OSR2.HEK293 147 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 167 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 429 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 251 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 253 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 687 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 533 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 882 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 200 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 195 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 204 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 619 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 344 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 251 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 256 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 281 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 404 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 284 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 371 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 152 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 440 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 661 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 454 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 317 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 528 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 419 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 343 bp overlap
SMAD3 3 datasets
ChIP BG03 GSE21614.SMAD3.BG03 177 bp overlap
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 175 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 217 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 605 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 528 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 513 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 435 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 485 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 568 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 488 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 737 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 164 bp overlap
ChIP hESC GSE69479.SOX2.hESC 184 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 387 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 209 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_W164A GSE139053.SS18-SSX.fibroblast_W164A 161 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 481 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 183 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 435 bp overlap
TCF7 2 datasets
ChIP GM12878 ENCFF749DPM 365 bp overlap
ChIP GM12878 ENCSR501DKS.TCF7.GM12878 140 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 273 bp overlap
TRIM28 2 datasets
ChIP WIBR3 GSE84382.TRIM28.WIBR3 172 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 270 bp overlap
USF1 2 datasets
ChIP WA01 ENCSR000BIU.USF1.WA01 121 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 175 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 272 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 252 bp overlap
ZNF264 1 dataset
ChIP HEK293 GSE76494.ZNF264.HEK293 151 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 292 bp overlap