chrX : 51,895,037 – 51,895,207
170 bp 77 TFs 1 linked gene
This 170 bp open chromatin element is linked to MAGED1 and is bound by 77 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
MAGED1 1.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:51,890,037 – 51,900,207
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 85 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 98 bp overlap
ARID4A 1 dataset
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 170 bp overlap
ASCL1 3 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 109 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 143 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 109 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 128 bp overlap
BCL11B 1 dataset
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 86 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 129 bp overlap
BRD4 11 datasets
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 166 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 114 bp overlap
ChIP DND41_E GSE54379.BRD4.DND41_E 52 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 170 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 163 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 91 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 76 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 170 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 170 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 149 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 118 bp overlap
CHD1 1 dataset
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 55 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 132 bp overlap
CTCF 13 datasets
ChIP CUTLL1_GSI GSE130140.CTCF.CUTLL1_GSI 87 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 170 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 62 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 69 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 75 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 170 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 170 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 170 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 93 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 90 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 108 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 133 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 116 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 170 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 170 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 170 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 170 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 121 bp overlap
HMGXB4 1 dataset
ChIP Hep-G2 ENCSR599XKG.HMGXB4.Hep-G2 170 bp overlap
HNRNPK 1 dataset
ChIP primary-keratinocyte GSE122327.HNRNPK.primary-keratinocyte 170 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 163 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 54 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 117 bp overlap
KMT2A 2 datasets
ChIP L826 GSE83671.KMT2A.L826 151 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 70 bp overlap
MAX 2 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 120 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 161 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 85 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 90 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 139 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 102 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 170 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 170 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 54 bp overlap
MYB 5 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 170 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 170 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 170 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 103 bp overlap
ChIP SEM GSE117864.MYB.SEM 154 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 170 bp overlap
MYC 2 datasets
ChIP Jurkat GSE83777.MYC.Jurkat 170 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 86 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 119 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 170 bp overlap
MYOD1 6 datasets
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 170 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 170 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 158 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 149 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 163 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 158 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 77 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 64 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 170 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 126 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 170 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 170 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 158 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 129 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 126 bp overlap
NFATC3 1 dataset
ChIP Hep-G2 GSE97661.NFATC3.Hep-G2 59 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 170 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 63 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 50 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 88 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 87 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 170 bp overlap
PKNOX1 1 dataset
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 158 bp overlap
PML 1 dataset
ChIP GM12878 ENCFF160JQZ 170 bp overlap
POLR2A 9 datasets
ChIP GM12878 ENCFF263VRI 170 bp overlap
ChIP GM12892 ENCFF245LYF 170 bp overlap
ChIP GM12892 ENCFF506PGQ 170 bp overlap
ChIP GM19099 ENCFF726IBN 170 bp overlap
ChIP GM19193 ENCFF599VTO 170 bp overlap
ChIP IMR-90 ENCFF672YWV 170 bp overlap
ChIP adrenal gland ENCFF843OBJ 170 bp overlap
ChIP body of pancreas ENCFF501FEC 170 bp overlap
ChIP body of pancreas ENCFF675RCN 170 bp overlap
POLR2G 1 dataset
ChIP HepG2 ENCFF508UTS 127 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 118 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 161 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 170 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 83 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 148 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 154 bp overlap
ChIP liver ENCFF522JHE 170 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 84 bp overlap
RBM39 2 datasets
ChIP Hep-G2 GSE120104.RBM39.Hep-G2 170 bp overlap
ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 170 bp overlap
RELA 2 datasets
ChIP HDF_DMSO GSE77225.RELA.HDF_DMSO 82 bp overlap
ChIP HDF_NUTLIN GSE77225.RELA.HDF_NUTLIN 138 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 170 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 170 bp overlap
RUNX1 4 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 113 bp overlap
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 170 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 113 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 141 bp overlap
RUNX2 1 dataset
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 170 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 164 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 170 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 156 bp overlap
SIN3A 1 dataset
ChIP H1 ENCFF042ZSL 100 bp overlap
SMARCA4 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 170 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 134 bp overlap
SMARCB1 1 dataset
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 67 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 90 bp overlap
SP1 1 dataset
ChIP GM12878 ENCSR000BHK.SP1.GM12878 154 bp overlap
SUPT5H 3 datasets
ChIP MOLT-4_NVP2 GSE89384.SUPT5H.MOLT-4_NVP2 170 bp overlap
ChIP MOLT-4_SNS GSE89384.SUPT5H.MOLT-4_SNS 100 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 160 bp overlap
TAF1 4 datasets
ChIP GM12878 ENCFF746UKX 170 bp overlap
ChIP GM12878 ENCSR000BGS.TAF1.GM12878 131 bp overlap
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 149 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 111 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 117 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 125 bp overlap
TCF3 4 datasets
ChIP GM12878 ENCFF658WIO 170 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 106 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 59 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 170 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 132 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 102 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 102 bp overlap
YY1 10 datasets
ChIP GM12878 ENCFF908JTL 73 bp overlap
ChIP GM12891 ENCFF460SIS 170 bp overlap
ChIP GM12891 ENCSR000BKJ.YY1.GM12891 166 bp overlap
ChIP GM12892 ENCFF802MHJ 170 bp overlap
ChIP GM12892 ENCSR000BLT.YY1.GM12892 170 bp overlap
ChIP Hep-G2 ENCSR000BNT.YY1.Hep-G2 158 bp overlap
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 100 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 131 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 137 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 170 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 63 bp overlap
ZFX 2 datasets
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 170 bp overlap
ChIP HepG2 ENCFF016NZF 170 bp overlap
ZFY 2 datasets
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 147 bp overlap
ChIP HepG2 ENCFF106ELT 170 bp overlap
ZNF501 1 dataset
ChIP Hep-G2 ENCSR227PHM.ZNF501.Hep-G2 170 bp overlap
ZNF598 1 dataset
ChIP Hep-G2 ENCSR173NAL.ZNF598.Hep-G2 118 bp overlap
ZNF687 2 datasets
ChIP GM12878 ENCFF233SGE 170 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 124 bp overlap
ZNF891 1 dataset
ChIP Hep-G2 ENCSR020CLV.ZNF891.Hep-G2 87 bp overlap
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