chr19:57,887,264–57,887,897

chr19 : 57,887,264 – 57,887,897

633 bp 47 TFs 17 linked genes

This 633 bp open chromatin element is linked to 17 target genes and is bound by 47 transcription factors.

Linked Genes

17 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ZNF814		1.2 kb	Proximal	Proximity
ZNF417		29.0 kb	Distal	Multiome
ZNF587		37.7 kb	Distal	Multiome
ZNF418		47.8 kb	Distal	Multiome
ZNF587B		67.8 kb	Distal	Multiome
ZNF552		72.7 kb	Distal	Multiome
ZNF606		115.2 kb	Distal	Multiome
ZNF586		117.9 kb	Distal	Multiome
ZNF776		140.8 kb	Distal	Multiome
ZNF135		171.7 kb	Distal	Multiome
ZNF154		178.4 kb	Distal	Multiome
ZNF551		205.6 kb	Distal	Multiome
ZSCAN18		210.6 kb	Distal	Multiome
ZNF211		254.4 kb	Distal	Multiome
ZNF329		267.5 kb	Distal	Multiome
ZNF134		273.4 kb	Distal	Multiome
ZNF274		295.5 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

47 transcription factors

ChIP breast_tumor_Male_8 GSE104399.AR.breast_tumor_Male_8 260 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 136 bp overlap

BAF155 1 dataset

ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 160 bp overlap

ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap

ChIP MV4-11_IBET151_500nM GSE120715.BRD4.MV4-11_IBET151_500nM 135 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 463 bp overlap

CREB1 1 dataset

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 144 bp overlap

CTCF 30 datasets

ChIP D721Med ENCFF513FYD 131 bp overlap

ChIP GM12878 ENCFF635MMB 132 bp overlap

ChIP H9 ENCFF152GTF 291 bp overlap

ChIP H9 ENCFF152GTF 90 bp overlap

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 295 bp overlap

ChIP LNCAP ENCFF223HIG 264 bp overlap

ChIP LNCAP ENCFF700QXT 254 bp overlap

ChIP LNCaP clone FGC ENCFF519YVI 107 bp overlap

ChIP LNCaP clone FGC ENCFF957KCI 107 bp overlap

ChIP OCI-LY3 ENCFF939BYJ 188 bp overlap

ChIP OCI-LY7 ENCFF086AXQ 266 bp overlap

ChIP OCI-LY7 ENCFF086AXQ 62 bp overlap

ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 280 bp overlap

ChIP SU-DHL-6 ENCFF116KKR 301 bp overlap

ChIP SU-DHL-6 ENCFF116KKR 89 bp overlap

ChIP VCaP ENCFF858YQT 105 bp overlap

ChIP epithelial cell of esophagus ENCFF946GGT 197 bp overlap

ChIP epithelial cell of prostate ENCFF086GTI 131 bp overlap

ChIP epithelial cell of prostate ENCFF086GTI 121 bp overlap

ChIP epithelial cell of proximal tubule ENCFF763ZKS 169 bp overlap

ChIP foreskin keratinocyte ENCFF980OWR 176 bp overlap

ChIP heart left ventricle ENCFF987PUT 183 bp overlap

ChIP hepatocyte ENCFF263BLJ 180 bp overlap

ChIP keratinocyte ENCFF805QIE 180 bp overlap

ChIP mammary epithelial cell ENCFF164SPU 139 bp overlap

ChIP neural cell ENCFF335ADI 93 bp overlap

ChIP neural progenitor cell ENCFF420RBO 241 bp overlap

ChIP thyroid gland ENCFF300RYK 227 bp overlap

ChIP thyroid gland ENCFF631QRY 335 bp overlap

ChIP thyroid gland ENCFF631QRY 115 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF460KDD 350 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 633 bp overlap

ChIP DE DE-FOXA2-2 469 bp overlap

FOXK1 1 dataset

ChIP WTC11 ENCFF875IGU 391 bp overlap

FOXP4 1 dataset

ChIP WTC11 ENCFF708TAF 352 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 633 bp overlap

ChIP DE DE-GATA4-2 633 bp overlap

GATA6 10 datasets

ChIP AGS GSE51705.GATA6.AGS 225 bp overlap

ChIP DE DE-GATA6-1 633 bp overlap

ChIP DE DE-GATA6-2 552 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 541 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 558 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 573 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 633 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 633 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 531 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 441 bp overlap

ChIP DE_D1 S08-DE-d1-JUN-exp1 280 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 351 bp overlap

ChIP GM23338 ENCFF224LRO 325 bp overlap

KMT2A 1 dataset

ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 226 bp overlap

ChIP HEP GSE52637.LDB1.HEP 147 bp overlap

ChIP WTC11 ENCFF223QFY 585 bp overlap

ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 576 bp overlap

NANOG 7 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 538 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 240 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 502 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 402 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 190 bp overlap

ChIP hESC GSE18292.NANOG.hESC 105 bp overlap

ChIP K562 ENCFF167YID 167 bp overlap

ChIP WTC11 ENCFF634NAO 245 bp overlap

POLR2A 7 datasets

ChIP GM23338 ENCFF450WCS 491 bp overlap

ChIP H1 ENCFF566JSR 243 bp overlap

ChIP H1 ENCFF566JSR 203 bp overlap

ChIP H1 ENCFF566JSR 218 bp overlap

ChIP H1 ENCFF770YBQ 441 bp overlap

ChIP H1 ENCFF770YBQ 401 bp overlap

ChIP H1 ENCFF833NJP 411 bp overlap

POU5F1 8 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 284 bp overlap

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 546 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 409 bp overlap

ChIP OSK GSE81899.POU5F1.OSK 260 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 526 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 562 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 173 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE126634.RAD21.HAP1 296 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 303 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 282 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 145 bp overlap

ChIP GM12878 ENCSR387QUV.RELB.GM12878 238 bp overlap

ChIP LS180 GSE31939.RXR.LS180 87 bp overlap

ChIP LTAD_siCTBP1-AS-EtOH GSE94577.SFPQ.LTAD_siCTBP1-AS-EtOH 204 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 432 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 493 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 402 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 506 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 325 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 527 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 633 bp overlap

SMARCA4 2 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 146 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 169 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 335 bp overlap

SMARCC1 3 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 264 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 465 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 315 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 275 bp overlap

ChIP H1 ENCFF263FUH 321 bp overlap

TAF1 2 datasets

ChIP H1 ENCFF478SZO 485 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 382 bp overlap

ChIP H1 ENCFF859IIO 377 bp overlap

ChIP hESC GSE122298.TBP.hESC 214 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 176 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 288 bp overlap

TCF12 2 datasets

ChIP H1 ENCFF203EBH 251 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 198 bp overlap

TCF21 1 dataset

ChIP HCASMC GSE124011.TCF21.HCASMC 175 bp overlap

ChIP NPC GSE154479.TCF3.NPC 240 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 405 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 391 bp overlap

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 240 bp overlap

ZBTB2 1 dataset

ChIP GM12878 GSE97661.ZBTB2.GM12878 90 bp overlap