chr2 : 12,096,249 – 12,096,860

611 bp 81 TFs 0 linked genes

This 611 bp open chromatin element has no linked target genes and is bound by 81 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

81 transcription factors

ARNTL 1 dataset

ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 239 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 438 bp overlap

ATF4 1 dataset

Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap

BCL6 1 dataset

ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 420 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 229 bp overlap

BHLHE22 2 datasets

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap

BRD4 1 dataset

ChIP hESC GSE33281.BRD4.hESC 71 bp overlap

Bach1::Mafk 2 datasets

Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap

Motif ES_0h ES_0h-Bach1Mafk_MA0591.2 12 bp overlap

Bhlha15 2 datasets

Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap

Motif ES_0h ES_0h-Bhlha15_MA1472.3 8 bp overlap

CEBPB 2 datasets

ChIP H1 ENCFF871PTR 261 bp overlap

ChIP WA01 ENCSR000EBV.CEBPB.WA01 149 bp overlap

CHD7 1 dataset

ChIP WA01 ENCSR000AVA.CHD7.WA01 238 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 254 bp overlap

CTCF 1 dataset

ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 171 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF460KDD 429 bp overlap

EP300 1 dataset

ChIP hESC GSE17917.EP300.hESC 489 bp overlap

ETV6 1 dataset

ChIP WTC11 ENCFF812SCD 437 bp overlap

EZH2 1 dataset

ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 234 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 186 bp overlap

HIF1A 1 dataset

ChIP U2OS_DMSO GSE85096.HIF1A.U2OS_DMSO 224 bp overlap

HSF1 1 dataset

Motif ES_0h ES_0h-HSF1_MA0486.2 13 bp overlap

HSF2 1 dataset

Motif ES_0h ES_0h-HSF2_MA0770.1 13 bp overlap

HSF4 1 dataset

Motif ES_0h ES_0h-HSF4_MA0771.1 13 bp overlap

JUN 1 dataset

ChIP HUES-8 GSE109524.JUN.HUES-8 423 bp overlap

KLF1 1 dataset

Motif ES_0h ES_0h-KLF1_MA0493.3 8 bp overlap

KLF10 1 dataset

Motif ES_0h ES_0h-KLF10_MA1511.2 9 bp overlap

KLF14 1 dataset

Motif ES_0h ES_0h-KLF14_MA0740.2 9 bp overlap

KLF2 1 dataset

Motif ES_0h ES_0h-KLF2_MA1515.2 8 bp overlap

KLF4 3 datasets

ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 76 bp overlap

Motif ES_0h ES_0h-KLF4_MA0039.5 8 bp overlap

ChIP hiPSC GSE56567.KLF4.hiPSC 169 bp overlap

KLF5 1 dataset

Motif ES_0h ES_0h-KLF5_MA0599.1 10 bp overlap

MAF 2 datasets

Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap

Motif ES_0h ES_0h-MAF_MA1520.2 13 bp overlap

MAF::NFE2 2 datasets

Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap

Motif ES_0h ES_0h-MAFNFE2_MA0501.2 11 bp overlap

MAFA 2 datasets

Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap

Motif ES_0h ES_0h-MAFA_MA1521.2 13 bp overlap

MAFG::NFE2L1 2 datasets

Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap

Motif ES_0h ES_0h-MAFGNFE2L1_MA0089.3 11 bp overlap

MAFK 2 datasets

Motif DE_12h DE_12h-MAFK_MA0496.4 10 bp overlap

Motif ES_0h ES_0h-MAFK_MA0496.4 10 bp overlap

MED1 1 dataset

ChIP OCI-Ly1 GSE53601.MED1.OCI-Ly1 292 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 307 bp overlap

MYF5 2 datasets

Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap

Motif ES_0h ES_0h-MYF5_MA1641.2 8 bp overlap

Mafg 2 datasets

Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap

Motif ES_0h ES_0h-Mafg_MA0659.4 12 bp overlap

NANOG 12 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 340 bp overlap

ChIP H1 ENCFF747ZPQ 241 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 607 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 545 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 210 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 611 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 503 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 246 bp overlap

ChIP hESC GSE18292.NANOG.hESC 93 bp overlap

ChIP hESC GSE20650.NANOG.hESC 355 bp overlap

ChIP hESC GSE18292.NANOG.hESC 101 bp overlap

NCOR1 1 dataset

ChIP OCI-Ly1 GSE29282.NCOR1.OCI-Ly1 180 bp overlap

NEUROD1 2 datasets

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap

Neurod2 4 datasets

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap

Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap

Nfe2l2 2 datasets

Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap

Motif ES_0h ES_0h-Nfe2l2_MA0150.3 11 bp overlap

ONECUT2 1 dataset

ChIP A-549 GSE102599.ONECUT2.A-549 207 bp overlap

Olig2 2 datasets

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap

PATZ1 1 dataset

Motif ES_0h ES_0h-PATZ1_MA1961.2 11 bp overlap

POLR2A 1 dataset

ChIP GM23338 ENCFF450WCS 491 bp overlap

POU2F1::SOX2 1 dataset

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU3F1 1 dataset

ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 80 bp overlap

POU3F2 1 dataset

ChIP hiPSC_SGC0946 GSE149017.POU3F2.hiPSC_SGC0946 80 bp overlap

POU3F3 1 dataset

Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap

POU4F1 1 dataset

Motif ES_0h ES_0h-POU4F1_MA0790.2 12 bp overlap

POU4F2 1 dataset

Motif ES_0h ES_0h-POU4F2_MA0683.2 15 bp overlap

POU4F3 1 dataset

Motif ES_0h ES_0h-POU4F3_MA0791.2 12 bp overlap

POU5F1 9 datasets

ChIP BG03 GSE21614.POU5F1.BG03 222 bp overlap

ChIP GM23338 ENCFF333SNB 290 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 611 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 484 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 157 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 295 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 402 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 571 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 215 bp overlap

Pou5f1::Sox2 1 dataset

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

Ptf1A 2 datasets

Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap

Motif ES_0h ES_0h-Ptf1A_MA1619.2 8 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000EBO.SIN3A.WA01 145 bp overlap

SMAD3 2 datasets

ChIP BG03 GSE36578.SMAD3.BG03 120 bp overlap

ChIP BG03 GSE21614.SMAD3.BG03 193 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 267 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 366 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 394 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 347 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 493 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 369 bp overlap

SMC1A-B 1 dataset

ChIP TC-32 GSE115250.SMC1A-B.TC-32 85 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 100 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 305 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 263 bp overlap

SP4 1 dataset

ChIP WA01 ENCSR000BQV.SP4.WA01 241 bp overlap

TBP 1 dataset

ChIP hESC GSE122298.TBP.hESC 208 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 141 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 405 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 184 bp overlap

Tcf12 2 datasets

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap

Twist2 2 datasets

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap

ZBTB18 2 datasets

Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap

Motif ES_0h ES_0h-ZBTB18_MA0698.2 11 bp overlap

ZNF362 1 dataset

ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 61 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 251 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 274 bp overlap

ZNF736 1 dataset

ChIP HEK293T GSE78099.ZNF736.HEK293T 130 bp overlap

ZNF816 1 dataset

Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap

ZNF93 2 datasets

Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap

Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap

ZSCAN16 1 dataset

Motif ES_0h ES_0h-ZSCAN16_MA2100.1 18 bp overlap

Zfp809 1 dataset

Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap

Zic2 2 datasets

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap