chr2 : 4,995,511 4,996,075
564 bp 103 TFs 0 linked genes
This 564 bp open chromatin element has no linked target genes and is bound by 103 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:4,990,511 – 5,001,075
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 126 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 197 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 324 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 214 bp overlap
Ar 1 dataset
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 116 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 132 bp overlap
CTCF 59 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 244 bp overlap
ChIP A673 ENCFF123WOM 83 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 130 bp overlap
ChIP GM23338 ENCFF531QOI 206 bp overlap
ChIP GM23338 ENCFF772DML 129 bp overlap
ChIP H1 ENCFF230QSV 119 bp overlap
ChIP H1 ENCFF414GZI 119 bp overlap
ChIP H9 ENCFF152GTF 100 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 72 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 118 bp overlap
ChIP Jurkat_DMSO GSE130140.CTCF.Jurkat_DMSO 86 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 100 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 183 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 119 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 119 bp overlap
ChIP MCF-7 ENCFF162GNE 133 bp overlap
ChIP MCF-7 ENCFF198DQX 140 bp overlap
ChIP MCF-7 ENCFF414SZG 136 bp overlap
ChIP MCF-7 ENCFF494VXA 140 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 110 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 100 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 240 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 96 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 108 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 170 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 121 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 174 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 226 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 299 bp overlap
ChIP RWPE2 ENCFF911IEE 407 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 143 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 62 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 89 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 109 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 111 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 147 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 198 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 168 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 110 bp overlap
ChIP brain ENCFF163BBN 116 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 165 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 92 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 145 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 91 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 172 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 117 bp overlap
ChIP endodermal cell ENCFF471YCZ 267 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 114 bp overlap
ChIP heart left ventricle ENCFF354HOQ 245 bp overlap
ChIP heart right ventricle ENCFF027ORH 254 bp overlap
ChIP heart right ventricle ENCFF435TKW 265 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 145 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 92 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 92 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 184 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 149 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 89 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 133 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 113 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 241 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 114 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 128 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 128 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 132 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 122 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 107 bp overlap
ESRRA 3 datasets
ChIP BT-474 GSE81651.ESRRA.BT-474 472 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 386 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 288 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 375 bp overlap
FERD3L 1 dataset
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
FOXD3 1 dataset
Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
GATA4 2 datasets
ChIP foregut GSE117136.GATA4.foregut 310 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 240 bp overlap
GATA6 1 dataset
ChIP foregut GSE117136.GATA6.foregut 280 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap
HNF4G 1 dataset
Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap
Hand1 1 dataset
Motif DE_12h DE_12h-Hand1_MA2123.1 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYC 1 dataset
ChIP MDA-MB-453_DHT GSE45201.MYC.MDA-MB-453_DHT 127 bp overlap
Msgn1 1 dataset
Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 261 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 306 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 209 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 524 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 317 bp overlap
ChIP hESC GSE18292.NANOG.hESC 98 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 103 bp overlap
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NFKB1 1 dataset
Motif DE_12h DE_12h-NFKB1_MA0105.4 13 bp overlap
NR3C1 1 dataset
Motif DE_12h DE_12h-NR3C1_MA0113.4 15 bp overlap
NR3C2 1 dataset
Motif DE_12h DE_12h-NR3C2_MA0727.2 15 bp overlap
NR4A1 2 datasets
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
PGR 1 dataset
Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU5F1 10 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 407 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 214 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 164 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 291 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 413 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 251 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 182 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR362VCG.POU5F1.neuron_bipolar_doxy_4d 117 bp overlap
Pgr 2 datasets
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RAD21 15 datasets
ChIP H1 ENCFF698EWO 169 bp overlap
ChIP H1 ENCFF967OJF 176 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 111 bp overlap
ChIP MCF-7 ENCFF724VCQ 164 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 277 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 152 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 181 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 132 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 185 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 105 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 251 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 209 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 134 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 177 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 175 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 120 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 364 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 213 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 337 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 185 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE76893.SMC1A.MCF-7 104 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 97 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 354 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 290 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 153 bp overlap
STAG1 2 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 154 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 153 bp overlap
Stat2 1 dataset
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 253 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 188 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 205 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 99 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 284 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 245 bp overlap
Thap11 1 dataset
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 149 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF114 2 datasets
ChIP GM23338 ENCFF631OSW 289 bp overlap
ChIP GM23338 ENCSR555KFE.ZNF114.GM23338 277 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF214 1 dataset
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 311 bp overlap
ZNF528 1 dataset
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
ZNF574 1 dataset
Motif DE_12h DE_12h-ZNF574_MA1982.2 14 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap