chr17 : 70,047,538 – 70,047,929
391 bp 61 TFs 1 linked gene
This 391 bp open chromatin element is linked to LINC01028 and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01028 3.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:70,042,538 – 70,052,929
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AFF4 3 datasets
ChIP HeLa GSE40632.AFF4.HeLa 352 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 211 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 93 bp overlap
AR 1 dataset
ChIP THP-1_R1881 GSE131381.AR.THP-1_R1881 172 bp overlap
ATF2 6 datasets
ChIP GM12878 ENCSR961PPA.ATF2.GM12878 94 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 129 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 163 bp overlap
ChIP HepG2 ENCFF955VER 68 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 116 bp overlap
ChIP K562 ENCFF139ZZG 152 bp overlap
ATF7 4 datasets
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 134 bp overlap
ChIP HepG2 ENCFF470FKK 134 bp overlap
ChIP MCF-7 ENCFF578WKB 132 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 122 bp overlap
BRCA1 1 dataset
ChIP HeLa-S3 ENCSR000EDB.BRCA1.HeLa-S3 137 bp overlap
BRD4 10 datasets
ChIP HeLa GSE151038.BRD4.HeLa 391 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 391 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 391 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 323 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 225 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 221 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 218 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 228 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 382 bp overlap
ChIP SUM229PE_neg_DMSO_24h GSE87418.BRD4.SUM229PE_neg_DMSO_24h 187 bp overlap
CDX2 2 datasets
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 193 bp overlap
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 173 bp overlap
CEBPB 3 datasets
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 391 bp overlap
ChIP HeLa-S3 ENCFF722WEG 222 bp overlap
ChIP K562 ENCFF584CTB 72 bp overlap
CHD2 2 datasets
ChIP HeLa-S3 ENCFF078QRQ 253 bp overlap
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 224 bp overlap
CREB1 3 datasets
ChIP A-549 ENCSR000BRC.CREB1.A-549 118 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 153 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 152 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 203 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 96 bp overlap
ELL2 3 datasets
ChIP HeLa GSE40632.ELL2.HeLa 165 bp overlap
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 255 bp overlap
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 211 bp overlap
EP300 6 datasets
ChIP HeLa-S3 ENCFF089VPQ 284 bp overlap
ChIP HeLa-S3 ENCFF245KNK 272 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 258 bp overlap
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 253 bp overlap
ChIP esophagus muscularis mucosa ENCFF406RGZ 241 bp overlap
ChIP tibial nerve ENCFF346AYA 315 bp overlap
FOS 2 datasets
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 111 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 234 bp overlap
FOXA1 2 datasets
ChIP A-549 ENCSR000BPX.FOXA1.A-549 175 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 210 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 391 bp overlap
ChIP DE DE-FOXA2-2 357 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 316 bp overlap
ChIP DE DE-GATA4-2 341 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 282 bp overlap
ChIP DE DE-GATA6-2 303 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 262 bp overlap
GTF2F1 1 dataset
ChIP HeLa-S3 ENCSR000ECZ.GTF2F1.HeLa-S3 172 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 74 bp overlap
JUN 3 datasets
ChIP HeLa-S3 ENCSR000EDG.JUN.HeLa-S3 163 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 327 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 215 bp overlap
JUNB 2 datasets
ChIP Karpas-299 GSE151413.JUNB.Karpas-299 145 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 199 bp overlap
JUND 2 datasets
ChIP HeLa-S3 ENCFF642OHL 190 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 186 bp overlap
MAFF 1 dataset
ChIP HeLa-S3 ENCFF783SBT 180 bp overlap
MAFK 1 dataset
ChIP HeLa-S3 ENCSR000ECK.MAFK.HeLa-S3 134 bp overlap
MAX 1 dataset
ChIP HeLa-S3 ENCSR000EZF.MAX.HeLa-S3 72 bp overlap
MED1 4 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 217 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 208 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 290 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 211 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 210 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 369 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 120 bp overlap
NFYA 2 datasets
ChIP HeLa-S3 ENCFF016YWF 187 bp overlap
ChIP HeLa-S3 ENCSR000DNS.NFYA.HeLa-S3 192 bp overlap
NFYB 2 datasets
ChIP HeLa-S3 ENCFF854TNJ 263 bp overlap
ChIP HeLa-S3 ENCSR000DNR.NFYB.HeLa-S3 372 bp overlap
NR3C1 3 datasets
ChIP HCC70 GSE152203.NR3C1.HCC70 281 bp overlap
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 94 bp overlap
ChIP HeLa-B2_TA GSE24518.NR3C1.HeLa-B2_TA 168 bp overlap
NR4A1 1 dataset
ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 127 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 282 bp overlap
PBX1 2 datasets
ChIP A-549 ENCSR637RKG.PBX1.A-549 307 bp overlap
ChIP A549 ENCFF475JCE 349 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 260 bp overlap
ChIP K562 ENCFF286KMN 391 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 131 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 363 bp overlap
PKNOX1 4 datasets
ChIP HEK293T ENCFF174WDB 212 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 377 bp overlap
ChIP MCF-7 ENCFF116OCS 384 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 210 bp overlap
POLR2A 10 datasets
ChIP breast epithelium ENCFF045XXN 304 bp overlap
ChIP breast epithelium ENCFF960NNA 391 bp overlap
ChIP breast epithelium ENCFF960NNA 191 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 349 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 230 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 121 bp overlap
ChIP sigmoid colon ENCFF748YVT 358 bp overlap
ChIP sigmoid colon ENCFF754JQR 270 bp overlap
ChIP suprapubic skin ENCFF083NEJ 237 bp overlap
ChIP suprapubic skin ENCFF748PRQ 260 bp overlap
RAD21 3 datasets
ChIP HeLa-S3 ENCFF775CHI 231 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 154 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 391 bp overlap
RCOR1 1 dataset
ChIP HeLa-S3 ENCSR000ECM.RCOR1.HeLa-S3 112 bp overlap
RELA 5 datasets
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 184 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 280 bp overlap
ChIP HeLa_WT-1H GSE116284.RELA.HeLa_WT-1H 336 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 166 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 138 bp overlap
RFX5 1 dataset
ChIP HeLa-S3 ENCSR000ECX.RFX5.HeLa-S3 162 bp overlap
SIN3A 1 dataset
ChIP PFSK-1 ENCFF218MAY 267 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 362 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 271 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 264 bp overlap
SMARCA4 9 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 78 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 109 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 171 bp overlap
ChIP A-549_AG15688 GSE132290.SMARCA4.A-549_AG15688 290 bp overlap
ChIP A-549_AG15689 GSE132290.SMARCA4.A-549_AG15689 263 bp overlap
ChIP A-549_AG15721 GSE132290.SMARCA4.A-549_AG15721 63 bp overlap
ChIP A-549_AG15722 GSE132290.SMARCA4.A-549_AG15722 58 bp overlap
ChIP A-549_AG15723 GSE132290.SMARCA4.A-549_AG15723 74 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 96 bp overlap
SMC3 6 datasets
ChIP HeLa GSE126990.SMC3.HeLa 316 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 317 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 317 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 391 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 334 bp overlap
ChIP HeLa-S3 ENCSR000ECS.SMC3.HeLa-S3 196 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 331 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 333 bp overlap
STAG1 2 datasets
ChIP HeLa GSE126990.STAG1.HeLa 334 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 334 bp overlap
STAT1 1 dataset
ChIP HeLa-S3 ENCSR000EZK.STAT1.HeLa-S3 347 bp overlap
STAT3 11 datasets
ChIP HCC70 GSE152203.STAT3.HCC70 228 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 391 bp overlap
ChIP HeLa-S3 ENCFF655DGU 120 bp overlap
ChIP HeLa-S3 ENCSR000EDC.STAT3.HeLa-S3 247 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 239 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 238 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 238 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 224 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 196 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 130 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 167 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 171 bp overlap
TCF7L2 1 dataset
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 246 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 135 bp overlap
USF2 2 datasets
ChIP HeLa-S3 ENCFF765YUZ 102 bp overlap
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 92 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 229 bp overlap
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