chr17 : 7,408,317 7,408,771
454 bp 66 TFs 3 linked genes
This 454 bp open chromatin element is linked to NLGN2, TMEM256-PLSCR3, and TMEM256 and is bound by 66 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
NLGN2 3.4 kb Proximal Proximity
TMEM256-PLSCR3 4.2 kb Proximal Proximity
TMEM256 4.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:7,403,317 – 7,413,771
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 404 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 263 bp overlap
BCL11A 1 dataset
ChIP MDA-MB-157 ERP003925.BCL11A.MDA-MB-157 323 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 216 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 324 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 262 bp overlap
BRD4 7 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 184 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 181 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 332 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 454 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 172 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 178 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 426 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 270 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 204 bp overlap
CBX7 4 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 359 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.CBX7.HEK293T_PCGF2fl_OHT 400 bp overlap
ChIP hESC GSE133412.CBX7.hESC 454 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 369 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 386 bp overlap
CTCF 7 datasets
ChIP B cell ENCFF506FKC 407 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 341 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 261 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 204 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 128 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 454 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 344 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 115 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 245 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 158 bp overlap
EP300 1 dataset
ChIP MCF-7_shCtrl GSE128445.EP300.MCF-7_shCtrl 100 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 337 bp overlap
ESR1 3 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 222 bp overlap
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 196 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 267 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 352 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 233 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 174 bp overlap
GABPA 2 datasets
ChIP MCF-7 GSE72082.GABPA.MCF-7 103 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 241 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 103 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 454 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 204 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 125 bp overlap
HNRNPL 4 datasets
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 213 bp overlap
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 213 bp overlap
ChIP K-562 ENCSR594BNR.HNRNPL.K-562 332 bp overlap
ChIP K-562 GSE120104.HNRNPL.K-562 326 bp overlap
INTS11 2 datasets
ChIP HL-60 GSE106359.INTS11.HL-60 347 bp overlap
ChIP HL-60_PMA GSE106359.INTS11.HL-60_PMA 202 bp overlap
INTS13 2 datasets
ChIP HL-60 GSE106359.INTS13.HL-60 267 bp overlap
ChIP HL-60_PMA GSE106359.INTS13.HL-60_PMA 297 bp overlap
JARID2 1 dataset
ChIP hESC GSE133412.JARID2.hESC 445 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 454 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 315 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 357 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 292 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 61 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 176 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 454 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 80 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 454 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 454 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 195 bp overlap
PCGF1 2 datasets
ChIP HEK293T_PCGF135fl GSE119618.PCGF1.HEK293T_PCGF135fl 292 bp overlap
ChIP WA01 GSE104690.PCGF1.WA01 375 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 262 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 454 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 348 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 402 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 390 bp overlap
RNF2 6 datasets
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 359 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 329 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 454 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.RNF2.HEK293T_PCGF2fl_OHT 309 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 238 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 411 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 418 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 454 bp overlap
RUNX1 1 dataset
ChIP H9_DOX-5_HA GSE137670.RUNX1.H9_DOX-5_HA 199 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 256 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 309 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 353 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d0 244 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 292 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 429 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 454 bp overlap
SSRP1 1 dataset
ChIP HT-1080_AclacinomycinA GSE107595.SSRP1.HT-1080_AclacinomycinA 382 bp overlap
SUZ12 6 datasets
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 403 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 454 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 283 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 438 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 454 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 454 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TAF15 2 datasets
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 191 bp overlap
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 191 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 132 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 412 bp overlap
TP53 1 dataset
ChIP IMR-90_APO GSE53491.TP53.IMR-90_APO 106 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 149 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 183 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 353 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 441 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 176 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 454 bp overlap
ZNF649 1 dataset
ChIP HEK293T GSE78099.ZNF649.HEK293T 224 bp overlap