chr17 : 3,534,848 – 3,535,227
379 bp 71 TFs 1 linked gene
This 379 bp open chromatin element is linked to TRPV3 and is bound by 71 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TRPV3 4.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr17:3,529,848 – 3,540,227
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 74 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 124 bp overlap
BRD4 4 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 171 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 224 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 269 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 361 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 258 bp overlap
CTCF 7 datasets
ChIP A-549 ENCSR000DPF.CTCF.A-549 192 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 95 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 188 bp overlap
ChIP astrocyte ENCFF558APA 341 bp overlap
ChIP endodermal cell ENCFF471YCZ 321 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 234 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 164 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 293 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 229 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 155 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 91 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 117 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 247 bp overlap
ERG 2 datasets
ChIP SKNO-1 GSE23730.ERG.SKNO-1 204 bp overlap
ChIP aortic-endothelial-cell_D24 GSE139377.ERG.aortic-endothelial-cell_D24 60 bp overlap
ESR1 1 dataset
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 213 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 292 bp overlap
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 260 bp overlap
ETV6 2 datasets
ChIP GM12878 ENCFF105ZMI 94 bp overlap
ChIP GM12878 GSE97661.ETV6.GM12878 137 bp overlap
FLI1 2 datasets
ChIP A-673 GSE99959.FLI1.A-673 182 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 334 bp overlap
FOXP1 2 datasets
ChIP WTC11 ENCFF338WGC 368 bp overlap
ChIP WTC11 ENCFF338WGC 246 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 65 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 150 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 173 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 163 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCFF238LYK 81 bp overlap
JUN 1 dataset
ChIP A549 ENCFF846DUV 99 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 111 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 55 bp overlap
KLF1 4 datasets
ChIP HEK293 ENCFF159QSW 249 bp overlap
ChIP HEK293 ENCFF159QSW 64 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 379 bp overlap
ChIP HEK293 GSE76494.KLF1.HEK293 147 bp overlap
KLF15 1 dataset
ChIP HEK293 GSE76494.KLF15.HEK293 261 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 275 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 170 bp overlap
MAZ 6 datasets
ChIP A-549 ENCSR636YLV.MAZ.A-549 117 bp overlap
ChIP GM12878 ENCFF404CEP 357 bp overlap
ChIP GM12878 ENCFF404CEP 86 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 359 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 213 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 138 bp overlap
MED1 4 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 379 bp overlap
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 379 bp overlap
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 379 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 379 bp overlap
MED26 2 datasets
ChIP HCT-116 GSE121355.MED26.HCT-116 186 bp overlap
ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 346 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 70 bp overlap
NBN 1 dataset
ChIP GM12878 ENCFF213ZNN 93 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 178 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 234 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 275 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 329 bp overlap
NFXL1 1 dataset
ChIP K-562 ENCSR085DDI.NFXL1.K-562 290 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 129 bp overlap
PATZ1 1 dataset
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 238 bp overlap
PCBP1 3 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 259 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 225 bp overlap
ChIP HepG2 ENCFF604TPT 378 bp overlap
PCBP2 2 datasets
ChIP Hep-G2 ENCSR945NSF.PCBP2.Hep-G2 275 bp overlap
ChIP Hep-G2 GSE120104.PCBP2.Hep-G2 266 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 261 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 217 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 126 bp overlap
POLR2A 1 dataset
ChIP HCT116 ENCFF508RDJ 379 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 128 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 156 bp overlap
RAD21 1 dataset
ChIP HCT-116 GSE131606.RAD21.HCT-116 294 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 119 bp overlap
SMAD3 2 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 131 bp overlap
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 113 bp overlap
SMAD3-HIF1A 1 dataset
ChIP PC-3_hypoxia GSE106305.SMAD3-HIF1A.PC-3_hypoxia 133 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 249 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 160 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 181 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 267 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 379 bp overlap
SP1 2 datasets
ChIP HEK293 GSE76494.SP1.HEK293 274 bp overlap
ChIP WTC11 ENCFF688PEU 361 bp overlap
SP2 2 datasets
ChIP HEK293 ENCSR807LQP.SP2.HEK293 268 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 230 bp overlap
SP3 3 datasets
ChIP HEK293 ENCFF087XLA 379 bp overlap
ChIP HEK293 ENCFF087XLA 112 bp overlap
ChIP HEK293 ENCSR141PZA.SP3.HEK293 317 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 358 bp overlap
SUPT5H 3 datasets
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 179 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 213 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 187 bp overlap
TCF7L2 1 dataset
ChIP HCT-116 ENCSR000EUV.TCF7L2.HCT-116 152 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 260 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 343 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 284 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 284 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 331 bp overlap
ZFP69B 1 dataset
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 217 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 81 bp overlap
ZNF143 2 datasets
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 224 bp overlap
ChIP WA01 ENCSR000EBW.ZNF143.WA01 261 bp overlap
ZNF148 1 dataset
ChIP K-562 GSE121133.ZNF148.K-562 191 bp overlap
ZNF263 7 datasets
ChIP HEK293 ENCFF336CWQ 336 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 275 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 379 bp overlap
ChIP HepG2 ENCFF626SSV 338 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 379 bp overlap
ChIP K562 ENCFF650LPZ 306 bp overlap
ChIP WTC11 ENCFF893RTM 379 bp overlap
ZNF281 1 dataset
ChIP K-562 GSE121133.ZNF281.K-562 203 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 300 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 201 bp overlap
ZNF444 1 dataset
ChIP MCF-7 ENCSR038XIA.ZNF444.MCF-7 284 bp overlap
ZNF468 1 dataset
ChIP HEK293T GSE78099.ZNF468.HEK293T 233 bp overlap
ZNF512 1 dataset
ChIP HepG2 ENCFF113IGR 199 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 199 bp overlap
Huangfu Lab · Publications · Resources · Contact