chr16 : 13,070,291 13,070,801
510 bp 60 TFs 3 linked genes
This 510 bp open chromatin element is linked to SHISA9, ENSG00000262801, and CPPED1 and is bound by 60 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
SHISA9 168.9 kb Distal Multiome
ENSG00000262801 175.7 kb Distal Multiome
CPPED1 266.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:13,065,291 – 13,075,801
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 180 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 510 bp overlap
ChIP H1 ENCFF399KAM 393 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 510 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 307 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 266 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 333 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 135 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 144 bp overlap
BRD4 2 datasets
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 208 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 381 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 310 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 176 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 289 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 145 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 114 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 304 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 267 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 236 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 233 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 230 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 399 bp overlap
ESR1 1 dataset
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 193 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 403 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 216 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 263 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 328 bp overlap
ChIP DE DE-FOXA2-2 332 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 243 bp overlap
ChIP DE DE-GATA4-2 342 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 267 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 233 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 339 bp overlap
ChIP DE DE-GATA6-2 337 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 374 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 403 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 389 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 510 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 436 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 233 bp overlap
ChIP foregut GSE117136.GATA6.foregut 287 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 271 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 312 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 193 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 177 bp overlap
JUN 7 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 389 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 265 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 466 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 455 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 338 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 510 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 415 bp overlap
JUND 3 datasets
ChIP H1 ENCFF010YXS 136 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 110 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 126 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 210 bp overlap
ChIP H1 ENCFF914VQY 291 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 203 bp overlap
NANOG 8 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 424 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 125 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 246 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 161 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 293 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 495 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 344 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 199 bp overlap
POLR2A 2 datasets
ChIP GM23338 ENCFF450WCS 274 bp overlap
ChIP H1 ENCFF566JSR 200 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 208 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 451 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 113 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 262 bp overlap
RAD21 3 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 264 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 472 bp overlap
REST 2 datasets
ChIP WA01 ENCSR000BHM.REST.WA01 131 bp overlap
ChIP hippocampus GSE144226.REST.hippocampus 326 bp overlap
RFX1 4 datasets
ChIP MCF-7 ENCFF782EZS 302 bp overlap
ChIP MCF-7 ENCFF973QAD 264 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 306 bp overlap
ChIP MCF-7 ENCSR788XNX.RFX1.MCF-7 169 bp overlap
RFX5 3 datasets
ChIP H1 ENCFF605EGG 302 bp overlap
ChIP HepG2 ENCFF065UQI 275 bp overlap
ChIP WA01 ENCSR000ECF.RFX5.WA01 270 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 195 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 185 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 207 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 326 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 422 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 437 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 391 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 330 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 430 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 253 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 343 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 432 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 389 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 360 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 445 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 239 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 389 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 220 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 150 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 191 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 330 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 437 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 149 bp overlap
STAT3 3 datasets
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 202 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 246 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 195 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 272 bp overlap
TAF1 2 datasets
ChIP WA01 ENCSR000BHO.TAF1.WA01 109 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 156 bp overlap
TBP 2 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 93 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 64 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 376 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 446 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 407 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 409 bp overlap