chr13 : 103,291,879 – 103,292,445
566 bp 99 TFs 0 linked genes
This 566 bp open chromatin element has no linked target genes and is bound by 99 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:103,286,879 – 103,297,445
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 333 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 316 bp overlap
BRD4 2 datasets
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 357 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 269 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 253 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 89 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 147 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 241 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 410 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 226 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif ES_0h ES_0h-DUX4_MA0468.1 11 bp overlap
Dmrt1 1 dataset
Motif DE_12h DE_12h-Dmrt1_MA1603.2 9 bp overlap
EBF1 3 datasets
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 523 bp overlap
ChIP NALM-6 GSE126300.EBF1.NALM-6 566 bp overlap
ERG 1 dataset
ChIP VCaP GSE49091.ERG.VCaP 181 bp overlap
ETV5::DRGX 2 datasets
Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap
Motif ES_0h ES_0h-ETV5DRGX_MA1944.2 12 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif ES_0h ES_0h-FIGLA_MA0820.2 6 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
GATA1::TAL1 1 dataset
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
IKZF1 5 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
ChIP GM12878 ENCFF753XDO 307 bp overlap
ChIP GM12878 ENCFF824TGK 53 bp overlap
ChIP GM12878 ENCFF824TGK 374 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 343 bp overlap
IKZF2 6 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCFF918AID 219 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 222 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 241 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
KLF1 1 dataset
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
KLF2 1 dataset
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
KLF4 1 dataset
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
KLF6 1 dataset
Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 146 bp overlap
MSC 2 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 207 bp overlap
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 217 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 313 bp overlap
MYF6 2 datasets
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
Motif ES_0h ES_0h-MYF6_MA0667.1 10 bp overlap
MYOD1 2 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 99 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 305 bp overlap
NKX2-5 2 datasets
Motif DE_12h DE_12h-NKX2-5_MA0063.3 7 bp overlap
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_12h DE_12h-Nkx3-2_MA0122.4 10 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk GSE83725.PAX3-FOXO1.Hs-352-Sk 198 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 566 bp overlap
PBX1-2-3 1 dataset
ChIP 697 GSE138031.PBX1-2-3.697 198 bp overlap
PBX3 4 datasets
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
Motif ES_0h ES_0h-PBX3_MA1114.2 11 bp overlap
ChIP GM12878 ENCFF285BQQ 101 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 201 bp overlap
PKNOX1 6 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
Motif ES_0h ES_0h-PKNOX1_MA0782.3 10 bp overlap
ChIP GM12878 ENCFF589FCY 489 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 471 bp overlap
ChIP MCF-7 ENCFF116OCS 411 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 300 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F1 2 datasets
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 2 datasets
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 138 bp overlap
POU4F3 2 datasets
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
PPARG 1 dataset
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
PRDM9 2 datasets
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP CHRF28811 ERP008568.RAD21.CHRF28811 167 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 352 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 263 bp overlap
RUNX1 2 datasets
ChIP 697 GSE138031.RUNX1.697 330 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 566 bp overlap
SCRT1 2 datasets
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
Motif ES_0h ES_0h-SCRT1_MA0743.3 10 bp overlap
SIX1 1 dataset
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
SIX2 4 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 313 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 109 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 181 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 114 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 327 bp overlap
SMARCA4 2 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 243 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 330 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 182 bp overlap
SNAI2 2 datasets
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
Motif ES_0h ES_0h-SNAI2_MA0745.3 8 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 194 bp overlap
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
SRF 2 datasets
Motif DE_12h DE_12h-SRF_MA0083.3 16 bp overlap
Motif ES_0h ES_0h-SRF_MA0083.3 16 bp overlap
Six4 1 dataset
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
TAL1::TCF3 2 datasets
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
Motif ES_0h ES_0h-TAL1TCF3_MA0091.2 10 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 329 bp overlap
TBP 1 dataset
Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap
TBX21 2 datasets
ChIP GM12878 ENCFF951HUW 417 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 443 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 319 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 201 bp overlap
TFAP4 2 datasets
Motif DE_12h DE_12h-TFAP4_MA1570.1 10 bp overlap
Motif ES_0h ES_0h-TFAP4_MA1570.1 10 bp overlap
Tcf21 2 datasets
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif ES_0h ES_0h-ZEB1_MA0103.4 6 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap
ZNF217 1 dataset
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 112 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF257 2 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF416 1 dataset
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF675 2 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF701 2 datasets
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
Motif ES_0h ES_0h-ZNF701_MA1987.2 17 bp overlap
ZNF85 2 datasets
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Huangfu Lab · Publications · Resources · Contact