chr13 : 98,163,973 98,164,873
900 bp 68 TFs 2 linked genes
This 900 bp open chromatin element is linked to FARP1 and IPO5 and is bound by 68 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
FARP1 21.1 kb Distal Multiome
IPO5 187.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:98,158,973 – 98,169,873
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AR 1 dataset
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 238 bp overlap
ARID4A 3 datasets
ChIP Hep-G2 ENCSR386UBO.ARID4A.Hep-G2 172 bp overlap
ChIP HepG2 ENCFF142DIE 668 bp overlap
ChIP HepG2 ENCFF142DIE 745 bp overlap
ARID4B 1 dataset
ChIP HepG2 ENCFF519OXJ 557 bp overlap
ASCL1 1 dataset
ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 347 bp overlap
BAZ2A 1 dataset
ChIP HepG2 ENCFF797RVO 337 bp overlap
BCL6 1 dataset
ChIP HepG2 ENCFF423EJH 377 bp overlap
CREB1 1 dataset
ChIP Hep-G2 ENCSR000BVL.CREB1.Hep-G2 114 bp overlap
CRX 3 datasets
ChIP retina_Hu20 GSE137311.CRX.retina_Hu20 257 bp overlap
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 201 bp overlap
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 274 bp overlap
CTCF 2 datasets
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 381 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 238 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 404 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 138 bp overlap
FOXA1 4 datasets
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP HepG2 ENCFF361KNY 285 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 198 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 867 bp overlap
ChIP DE DE-FOXA2-2 840 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF570ABM 405 bp overlap
ChIP HepG2 ENCFF894AYY 381 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 123 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 120 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 186 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 132 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 569 bp overlap
ChIP DE DE-GATA4-2 864 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 808 bp overlap
ChIP DE DE-GATA6-2 814 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 448 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 365 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 131 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 137 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 136 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 153 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 130 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 150 bp overlap
MAX 4 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 265 bp overlap
ChIP Hep-G2 ENCSR000BTM.MAX.Hep-G2 187 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 328 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 273 bp overlap
MED1 2 datasets
ChIP Hep-G2 ENCSR959XNY.MED1.Hep-G2 168 bp overlap
ChIP HepG2 ENCFF495TSS 461 bp overlap
MEF2D 2 datasets
ChIP retina_Hu21 GSE137311.MEF2D.retina_Hu21 237 bp overlap
ChIP retina_Hu25 GSE137311.MEF2D.retina_Hu25 229 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 196 bp overlap
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 226 bp overlap
MYC 2 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 219 bp overlap
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 240 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 116 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 338 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 411 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 402 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 290 bp overlap
ChIP hESC GSE18292.NANOG.hESC 209 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 637 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 255 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 399 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 242 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 285 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 262 bp overlap
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 229 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 261 bp overlap
NR2F2 1 dataset
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 243 bp overlap
NR2F6 1 dataset
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 205 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 264 bp overlap
PGR 1 dataset
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 343 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 311 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 318 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 316 bp overlap
PRPF4 1 dataset
ChIP Hep-G2 ENCSR243LNQ.PRPF4.Hep-G2 183 bp overlap
RBM22 1 dataset
ChIP HepG2 ENCFF292RVQ 168 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 330 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 249 bp overlap
SIN3A 3 datasets
ChIP Hep-G2 ENCSR000BGL.SIN3A.Hep-G2 207 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 125 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 140 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 740 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 634 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 312 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 577 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 520 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 149 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 158 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 257 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 473 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 469 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 294 bp overlap
SP5 1 dataset
ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 258 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 225 bp overlap
TEAD4 1 dataset
ChIP HepG2 ENCFF006QNB 431 bp overlap
TFAP4 3 datasets
ChIP Hep-G2 ENCSR103SZL.TFAP4.Hep-G2 289 bp overlap
ChIP HepG2 ENCFF030SRU 371 bp overlap
ChIP HepG2 ENCFF932XOY 182 bp overlap
TGIF2 1 dataset
ChIP HepG2 ENCFF421ZJN 411 bp overlap
TP63 1 dataset
ChIP keratinocyte GSE33571.TP63.keratinocyte 164 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 170 bp overlap
ZBED4 1 dataset
ChIP Hep-G2 ENCSR409PMR.ZBED4.Hep-G2 137 bp overlap
ZBTB33 1 dataset
ChIP HepG2 ENCFF778UKV 230 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 516 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 187 bp overlap
ZNF788P 1 dataset
ChIP HepG2 ENCFF689IBZ 128 bp overlap