chr13 : 83,883,018 83,883,470
452 bp 68 TFs 2 linked genes
This 452 bp open chromatin element is linked to ENSG00000285680 and SLITRK1 and is bound by 68 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ENSG00000285680 563 bp At TSS Proximity
SLITRK1 625 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:83,878,018 – 83,888,470
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 229 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 343 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 398 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 443 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 266 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 164 bp overlap
BRD4 4 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 372 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 393 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 160 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 333 bp overlap
CTBP1 1 dataset
ChIP HEK293T ENCFF003PDY 285 bp overlap
CTCF 28 datasets
ChIP 22Rv1 ENCFF466OXN 435 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 350 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 349 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 176 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 246 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 185 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 281 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 264 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 212 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 194 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 282 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF092NXX 369 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 303 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF265AZL 345 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 360 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 418 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 405 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 206 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF377YBQ 294 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 325 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF478RRB 255 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 339 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 343 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF749FBO 344 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 395 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF896AZK 405 bp overlap
ChIP islet ERP004003.CTCF.islet 160 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 112 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 125 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 320 bp overlap
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 260 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 164 bp overlap
ETV2 1 dataset
Motif DE_12h DE_12h-ETV2_MA0762.2 9 bp overlap
ETV6 2 datasets
ChIP GM12878 ENCSR626VUC.ETV6.GM12878 138 bp overlap
ChIP WTC11 ENCFF812SCD 409 bp overlap
EZH2 6 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 118 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 159 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 271 bp overlap
ChIP keratinocyte ENCFF070STK 198 bp overlap
ChIP keratinocyte ENCFF070STK 397 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 452 bp overlap
FOXA1 3 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 343 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 238 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 182 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 190 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 181 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 181 bp overlap
GATA3 4 datasets
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 258 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 349 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 313 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 272 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 66 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 351 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 261 bp overlap
KDM4A 2 datasets
ChIP WA01 ENCSR000AVC.KDM4A.WA01 221 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 55 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCFF482NJV 292 bp overlap
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 241 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 244 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 164 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
MXI1 3 datasets
ChIP neural ENCSR934NHU.MXI1.neural 412 bp overlap
ChIP neural cell ENCFF623HQN 452 bp overlap
ChIP neural cell ENCFF623HQN 307 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 285 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 231 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 452 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 296 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1538.1 15 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
PBX2 1 dataset
Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap
PKNOX1 2 datasets
ChIP HEK293T ENCFF174WDB 329 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 293 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 452 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 240 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RAD21 2 datasets
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 279 bp overlap
ChIP neural cell ENCFF564MOT 396 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 298 bp overlap
REST 3 datasets
ChIP WA01 ENCSR000BHM.REST.WA01 136 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 344 bp overlap
ChIP neural cell ENCFF882LXX 283 bp overlap
RNF2 1 dataset
ChIP HUES-64 GSE104059.RNF2.HUES-64 222 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 363 bp overlap
Rhox11 1 dataset
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 409 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 241 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 322 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 359 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 317 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 340 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 134 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 203 bp overlap
SUZ12 1 dataset
ChIP hiPSC GSE124903.SUZ12.hiPSC 246 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF224 1 dataset
ChIP HEK293T GSE78099.ZNF224.HEK293T 301 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap