chr13 : 59,357,830 – 59,358,460
630 bp 82 TFs 2 linked genes
This 630 bp open chromatin element is linked to ENSG00000288015 and PCDH17 and is bound by 82 transcription factors.
Linked Genes
2 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000288015 127.6 kb Distal Multiome
PCDH17 1726.4 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:59,352,830 – 59,363,460
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
82 transcription factors
Source
Cell type
AR 5 datasets
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 215 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 203 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 264 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 169 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 300 bp overlap
ARNT::HIF1A 3 datasets
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_48h DE_48h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap
BRD4 2 datasets
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 202 bp overlap
ChIP SUM185_DMSO GSE63581.BRD4.SUM185_DMSO 315 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CEBPA 3 datasets
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 251 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.CEBPA.Kasumi-1_SIRUNX1ETO 190 bp overlap
ChIP T-47D GSE132649.CEBPA.T-47D 277 bp overlap
EHF 2 datasets
Motif DE_36h DE_36h-EHF_MA0598.4 9 bp overlap
Motif DE_48h DE_48h-EHF_MA0598.4 9 bp overlap
ELF3 2 datasets
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 217 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 124 bp overlap
ESR1 15 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 172 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 589 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 520 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 453 bp overlap
ChIP T-47D_JC4732 GSE126004.ESR1.T-47D_JC4732 259 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 248 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 305 bp overlap
ChIP T-47D_siCont-IL6 GSE126004.ESR1.T-47D_siCont-IL6 183 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 539 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 559 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 546 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 378 bp overlap
ChIP breast_tumor_Female_8 GSE104399.ESR1.breast_tumor_Female_8 272 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 541 bp overlap
ChIP breast_tumor_Male_28 GSE104399.ESR1.breast_tumor_Male_28 424 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 595 bp overlap
ETV1 2 datasets
ChIP GIST GSE22441.ETV1.GIST 107 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 225 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 298 bp overlap
Elf5 2 datasets
Motif DE_36h DE_36h-Elf5_MA0136.4 8 bp overlap
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
Erg 2 datasets
Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
FIGLA 1 dataset
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
FOXA1 20 datasets
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 222 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 157 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 227 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 360 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 364 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 504 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 261 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 218 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 174 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 441 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 606 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 456 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 554 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 550 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 559 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 549 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 392 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 337 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 357 bp overlap
ChIP prostate-cancer_PDX_136 GSE130408.FOXA1.prostate-cancer_PDX_136 75 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 601 bp overlap
ChIP DE DE-FOXA2-2 621 bp overlap
GABPA 2 datasets
Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
GATA2 4 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 119 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 119 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 293 bp overlap
ChIP hiPSC_SLC9ebs GSE107639.GATA2.hiPSC_SLC9ebs 331 bp overlap
GATA3 5 datasets
ChIP A1A3_Brg1KD_EtOH GSE112491.GATA3.A1A3_Brg1KD_EtOH 162 bp overlap
ChIP A1A3_Dex GSE112491.GATA3.A1A3_Dex 196 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 375 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 401 bp overlap
ChIP breast_tumor_Male_15 GSE104399.GATA3.breast_tumor_Male_15 401 bp overlap
GATA3_Cter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Cter.T-47D_CR3flp 177 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Cter.T-47D_flp-ctrl 282 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 461 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 376 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 465 bp overlap
ChIP DE DE-GATA4-2 511 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 492 bp overlap
ChIP DE DE-GATA6-2 530 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 395 bp overlap
Gfi1B 1 dataset
Motif DE_48h DE_48h-Gfi1B_MA0483.2 10 bp overlap
HSF1 1 dataset
Motif DE_36h DE_36h-HSF1_MA0486.2 13 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 147 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 198 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 411 bp overlap
KLF17 2 datasets
Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap
Motif DE_48h DE_48h-KLF17_MA1514.2 14 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 371 bp overlap
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 336 bp overlap
MORC2 1 dataset
ChIP HeLa_V5-MORC2-KO GSE95451.MORC2.HeLa_V5-MORC2-KO 210 bp overlap
MTF1 2 datasets
Motif DE_36h DE_36h-MTF1_MA0863.1 14 bp overlap
Motif DE_48h DE_48h-MTF1_MA0863.1 14 bp overlap
NCOR2 1 dataset
ChIP AML_shaml1-eto GSE131939.NCOR2.AML_shaml1-eto 227 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 156 bp overlap
NFYB 3 datasets
Motif DE_36h DE_36h-NFYB_MA0502.3 9 bp overlap
Motif DE_48h DE_48h-NFYB_MA0502.3 9 bp overlap
Motif DE_60h DE_60h-NFYB_MA0502.3 9 bp overlap
NOTCH3 1 dataset
ChIP TALL-1_DMSO GSE104261.NOTCH3.TALL-1_DMSO 189 bp overlap
NR3C1 2 datasets
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 255 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 253 bp overlap
Nfatc2 2 datasets
Motif DE_36h DE_36h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap
Nr2e3 2 datasets
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_48h DE_48h-Nr2e3_MA0164.2 6 bp overlap
OSR2 2 datasets
Motif DE_36h DE_36h-OSR2_MA1646.2 8 bp overlap
Motif DE_48h DE_48h-OSR2_MA1646.2 8 bp overlap
PGR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 630 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 412 bp overlap
PLAG1 3 datasets
Motif DE_36h DE_36h-PLAG1_MA0163.1 14 bp overlap
Motif DE_48h DE_48h-PLAG1_MA0163.1 14 bp overlap
Motif DE_60h DE_60h-PLAG1_MA0163.1 14 bp overlap
POLR2A 1 dataset
ChIP body of pancreas ENCFF501FEC 548 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 202 bp overlap
Pparg::Rxra 2 datasets
Motif DE_36h DE_36h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_48h DE_48h-PpargRxra_MA0065.3 13 bp overlap
RBPJ 3 datasets
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 260 bp overlap
RUNX1 1 dataset
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 180 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 251 bp overlap
Runx1 1 dataset
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 391 bp overlap
SMAD3 3 datasets
Motif DE_36h DE_36h-SMAD3_MA0795.1 10 bp overlap
Motif DE_48h DE_48h-SMAD3_MA0795.1 10 bp overlap
Motif DE_60h DE_60h-SMAD3_MA0795.1 10 bp overlap
SMAD5 3 datasets
Motif DE_36h DE_36h-SMAD5_MA1557.1 10 bp overlap
Motif DE_48h DE_48h-SMAD5_MA1557.1 10 bp overlap
Motif DE_60h DE_60h-SMAD5_MA1557.1 10 bp overlap
SMARCC1 2 datasets
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 464 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 488 bp overlap
SOX10 3 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 360 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 152 bp overlap
SOX4 3 datasets
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
STAT3 6 datasets
ChIP MDA-MB-453 GSE152203.STAT3.MDA-MB-453 178 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 394 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 525 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 433 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 373 bp overlap
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 262 bp overlap
Spi1 2 datasets
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
Stat4 1 dataset
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_36h DE_36h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 3 datasets
Motif DE_36h DE_36h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif DE_48h DE_48h-Stat5aStat5b_MA0519.2 9 bp overlap
Motif DE_60h DE_60h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 3 datasets
Motif DE_36h DE_36h-Stat5b_MA1625.2 9 bp overlap
Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
TCF4 1 dataset
Motif DE_36h DE_36h-TCF4_MA0830.3 8 bp overlap
TCF7L2 1 dataset
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 394 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 174 bp overlap
Thap11 3 datasets
Motif DE_36h DE_36h-Thap11_MA1573.2 14 bp overlap
Motif DE_48h DE_48h-Thap11_MA1573.2 14 bp overlap
Motif DE_60h DE_60h-Thap11_MA1573.2 14 bp overlap
ZBTB12 1 dataset
Motif DE_36h DE_36h-ZBTB12_MA1649.2 7 bp overlap
ZBTB24 2 datasets
Motif DE_36h DE_36h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_48h DE_48h-ZBTB24_MA2330.1 10 bp overlap
ZEB1 1 dataset
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
ZKSCAN3 1 dataset
Motif DE_60h DE_60h-ZKSCAN3_MA1973.2 14 bp overlap
ZKSCAN5 3 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF213 1 dataset
Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap
ZNF343 1 dataset
Motif DE_36h DE_36h-ZNF343_MA1711.2 16 bp overlap
ZNF418 1 dataset
Motif DE_36h DE_36h-ZNF418_MA1980.1 15 bp overlap
ZNF528 3 datasets
Motif DE_36h DE_36h-ZNF528_MA1597.1 17 bp overlap
Motif DE_48h DE_48h-ZNF528_MA1597.1 17 bp overlap
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
ZNF574 3 datasets
Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap
Motif DE_48h DE_48h-ZNF574_MA1982.2 14 bp overlap
Motif DE_60h DE_60h-ZNF574_MA1982.2 14 bp overlap
ZNF768 6 datasets
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif DE_48h DE_48h-ZNF768_MA1731.2 9 bp overlap
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap
Motif DE_60h DE_60h-ZNF768_MA1731.2 9 bp overlap
ZSCAN29 3 datasets
Motif DE_36h DE_36h-ZSCAN29_MA1602.2 11 bp overlap
Motif DE_48h DE_48h-ZSCAN29_MA1602.2 11 bp overlap
Motif DE_60h DE_60h-ZSCAN29_MA1602.2 11 bp overlap
Huangfu Lab · Publications · Resources · Contact