chr13 : 55,583,691 – 55,584,411

720 bp 81 TFs 1 linked gene

This 720 bp open chromatin element is linked to ENSG00000274090 and is bound by 81 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000274090		167 bp	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

81 transcription factors

ARNT::HIF1A 1 dataset

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 376 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 378 bp overlap

Atoh1 1 dataset

Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap

BACH1 1 dataset

ChIP WA01 ENCSR000EBQ.BACH1.WA01 194 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap

BRD4 4 datasets

ChIP CHL-1 GSE95585.BRD4.CHL-1 193 bp overlap

ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 260 bp overlap

ChIP Hep-G2 GSE123097.BRD4.Hep-G2 206 bp overlap

ChIP hESC GSE33281.BRD4.hESC 61 bp overlap

CHD1 1 dataset

ChIP WA01 ENCSR000AQK.CHD1.WA01 334 bp overlap

CREB1 2 datasets

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 175 bp overlap

ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 202 bp overlap

DMRTA1 1 dataset

Motif DE_12h DE_12h-DMRTA1_MA1707.2 10 bp overlap

FOXN3 1 dataset

Motif DE_12h DE_12h-FOXN3_MA1489.1 8 bp overlap

FOXP2 1 dataset

Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap

GATA6 5 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 304 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 199 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 368 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 509 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 326 bp overlap

GFI1 3 datasets

Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap

Motif ES_0h ES_0h-GFI1_MA0038.3 11 bp overlap

GLIS1 1 dataset

Motif DE_12h DE_12h-GLIS1_MA0735.2 15 bp overlap

GLIS3 1 dataset

Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap

Gfi1B 3 datasets

Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap

Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap

Gli2 1 dataset

Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000BNR.HDAC2.WA01 241 bp overlap

HIC2 1 dataset

Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap

HIF1A 1 dataset

Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap

HOXA3 1 dataset

Motif ES_0h ES_0h-HOXA3_MA2119.1 7 bp overlap

HOXA4 1 dataset

Motif ES_0h ES_0h-HOXA4_MA1496.2 7 bp overlap

JUN 3 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 304 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 285 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 370 bp overlap

JUND 1 dataset

ChIP WA01 ENCSR000EBZ.JUND.WA01 124 bp overlap

KLF13 1 dataset

Motif DE_12h DE_12h-KLF13_MA0657.2 17 bp overlap

Lef1 1 dataset

Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

NANOG 6 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 535 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 362 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 486 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 479 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 469 bp overlap

ChIP hESC GSE18292.NANOG.hESC 93 bp overlap

NEUROD1 1 dataset

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 1 dataset

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

Nfat5 1 dataset

Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap

Nfatc2 1 dataset

Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_12h DE_12h-Nr1h3Rxra_MA0494.2 16 bp overlap

POLR2A 3 datasets

ChIP H1 ENCFF566JSR 416 bp overlap

ChIP H1 ENCFF566JSR 625 bp overlap

ChIP H1 ENCFF566JSR 492 bp overlap

POU5F1 5 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 358 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 507 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 306 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 172 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 87 bp overlap

PPARG 1 dataset

Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap

PRDM1 1 dataset

ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap

RAD21 1 dataset

ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 156 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 146 bp overlap

RBPJ 1 dataset

Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap

RREB1 1 dataset

Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap

SIN3A 1 dataset

ChIP WA01 ENCSR000EBO.SIN3A.WA01 223 bp overlap

SIX2 1 dataset

ChIP HEK GSE73865.SIX2.HEK 123 bp overlap

SMARCC1 2 datasets

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 178 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 85 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 428 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 87 bp overlap

Six3 2 datasets

Motif DE_12h DE_12h-Six3_MA0631.2 11 bp overlap

Motif ES_0h ES_0h-Six3_MA0631.2 11 bp overlap

TAF1 1 dataset

ChIP H1 ENCFF478SZO 329 bp overlap

TBP 4 datasets

ChIP WA01 ENCSR000ECB.TBP.WA01 231 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 110 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 57 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 139 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 415 bp overlap

TCF7 1 dataset

Motif ES_0h ES_0h-TCF7_MA0769.3 7 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 227 bp overlap

THRA 1 dataset

Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap

TRIM28 1 dataset

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 168 bp overlap

TWIST1 1 dataset

Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap

VEZF1 2 datasets

Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap

YY1 2 datasets

ChIP H1 ENCFF524BTL 337 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 148 bp overlap

ZBTB26 1 dataset

Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap

ZBTB7B 1 dataset

Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap

ZBTB7C 1 dataset

Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap

ZIC1 1 dataset

Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZIC5 1 dataset

Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap

ZNF157 1 dataset

Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap

ZNF184 1 dataset

Motif ES_0h ES_0h-ZNF184_MA2120.1 13 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 350 bp overlap

ZNF317 1 dataset

Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap

ZNF341 2 datasets

Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap

Motif ES_0h ES_0h-ZNF341_MA1655.2 8 bp overlap

ZNF416 1 dataset

Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap

ZNF449 1 dataset

Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap

ZNF454 1 dataset

Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap

ZNF528 1 dataset

Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap

ZNF547 1 dataset

Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap

ZNF582 1 dataset

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

ZNF784 1 dataset

Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap

ZNF85 1 dataset

Motif ES_0h ES_0h-ZNF85_MA1720.2 12 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap

Zfp809 1 dataset

Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap