chr12 : 106,132,281 106,132,921
640 bp 64 TFs 1 linked gene
This 640 bp open chromatin element is linked to NUAK1 and is bound by 64 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NUAK1 6.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:106,127,281 – 106,137,921
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
ARID1A 4 datasets
ChIP 12Z GSE129781.ARID1A.12Z 161 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 134 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 125 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 90 bp overlap
ARID2 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 387 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 258 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 57 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 359 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 477 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 236 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 268 bp overlap
BNC2 1 dataset
ChIP SK-N-SH ENCFF174EMC 116 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 228 bp overlap
BRD4 5 datasets
ChIP HCC1806_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.HCC1806_100nMtrametinib300nMJQ1_24h 99 bp overlap
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 66 bp overlap
ChIP HCC1806_DMSO_24h GSE87418.BRD4.HCC1806_DMSO_24h 71 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 100 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 100 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 226 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 81 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 318 bp overlap
ESR1 5 datasets
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 206 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 551 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 368 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 489 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 319 bp overlap
ESRRA 4 datasets
ChIP HepG2 ENCFF033DVS 246 bp overlap
ChIP SK-BR-3 GSE81651.ESRRA.SK-BR-3 137 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 207 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 459 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 124 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 540 bp overlap
ChIP DE DE-FOXA2-2 499 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 125 bp overlap
GATA2 7 datasets
ChIP ESF GSE108408.GATA2.ESF 265 bp overlap
ChIP Hep-G2 ENCSR897LDT.GATA2.Hep-G2 262 bp overlap
ChIP HepG2 ENCFF905PYM 322 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 171 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 292 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 284 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 244 bp overlap
GATA3 3 datasets
ChIP A-549 ENCSR000BTI.GATA3.A-549 208 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 219 bp overlap
ChIP SK-N-SH ENCFF040SSB 329 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 640 bp overlap
ChIP DE DE-GATA4-2 640 bp overlap
ChIP foregut GSE117136.GATA4.foregut 412 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 574 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 438 bp overlap
ChIP DE DE-GATA6-2 640 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 571 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 640 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 640 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 640 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 640 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 640 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 530 bp overlap
ChIP foregut GSE117136.GATA6.foregut 445 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 447 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 366 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 636 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 137 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 194 bp overlap
HNF4A 2 datasets
ChIP Hep-G2 ERP000209.HNF4A.Hep-G2 95 bp overlap
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 69 bp overlap
JUN 5 datasets
ChIP A549 ENCFF191QZG 63 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 626 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 289 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 57 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 389 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 68 bp overlap
MAX 1 dataset
ChIP A549 ENCFF310XGQ 50 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 136 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 81 bp overlap
NR2F6 3 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF429VKC 198 bp overlap
ChIP HepG2 ENCFF514UJI 177 bp overlap
NR5A1 2 datasets
ChIP Hep-G2 ENCSR310OZS.NR5A1.Hep-G2 152 bp overlap
ChIP HepG2 ENCFF970YZO 183 bp overlap
NR5A2 2 datasets
ChIP A-549 ENCSR190GIW.NR5A2.A-549 148 bp overlap
ChIP A549 ENCFF834RVE 237 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 181 bp overlap
PGR 1 dataset
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 197 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 140 bp overlap
RBBP5 2 datasets
ChIP H1 ENCFF905HFL 182 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 257 bp overlap
RCOR1 1 dataset
ChIP HeLa-S3 ENCFF471KYI 129 bp overlap
RXRA 1 dataset
ChIP JMSU-1 GSE107734.RXRA.JMSU-1 179 bp overlap
SKI 2 datasets
ChIP Hep-G2 ENCSR754MUD.SKI.Hep-G2 159 bp overlap
ChIP HepG2 ENCFF631IPX 221 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 260 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 617 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 599 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 502 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 53 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 448 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 446 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 452 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 432 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 640 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 249 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 193 bp overlap
SMAD4 2 datasets
ChIP HepG2 ENCFF615GTE 184 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 248 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 90 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 203 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 359 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 259 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 346 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 253 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 89 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 268 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 431 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 165 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 640 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 227 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 157 bp overlap
THRA 1 dataset
ChIP HepG2 ENCFF025KMX 205 bp overlap
THRB 2 datasets
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 208 bp overlap
ChIP HepG2 ENCFF476INC 114 bp overlap
U2AF1 1 dataset
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 243 bp overlap
ZKSCAN1 5 datasets
ChIP HeLa-S3 ENCSR000ECJ.ZKSCAN1.HeLa-S3 224 bp overlap
ChIP Hep-G2 ENCSR157CAU.ZKSCAN1.Hep-G2 292 bp overlap
ChIP HepG2 ENCFF578KDY 157 bp overlap
ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 211 bp overlap
ChIP K562 ENCFF977CBA 263 bp overlap
ZMYM3 1 dataset
ChIP HepG2 ENCFF408KTI 254 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 304 bp overlap