chr12 : 90,004,388 – 90,004,548

160 bp 99 TFs 0 linked genes

This 160 bp open chromatin element has no linked target genes and is bound by 99 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

99 transcription factors

ALX3 1 dataset

Motif DE_12h DE_12h-ALX3_MA0634.2 6 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 160 bp overlap

BCL11A 1 dataset

ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 146 bp overlap

BCL6 2 datasets

ChIP B-cell_GERMINAL_CENTER GSE68349.BCL6.B-cell_GERMINAL_CENTER 98 bp overlap

ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 112 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD4 3 datasets

ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 119 bp overlap

ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 76 bp overlap

ChIP HAP1 GSE108387.BRD4.HAP1 103 bp overlap

CEBPB 1 dataset

ChIP WA01 ENCSR000EBV.CEBPB.WA01 71 bp overlap

DRGX 1 dataset

Motif DE_12h DE_12h-DRGX_MA1481.2 6 bp overlap

ELF1 1 dataset

ChIP GM12878 ENCSR841NDX.ELF1.GM12878 160 bp overlap

EMX1 1 dataset

Motif DE_12h DE_12h-EMX1_MA0612.3 6 bp overlap

EMX2 1 dataset

Motif DE_12h DE_12h-EMX2_MA0886.2 6 bp overlap

EN1 1 dataset

Motif DE_12h DE_12h-EN1_MA0027.3 6 bp overlap

EP300 2 datasets

ChIP GM12878 ENCFF039QRE 147 bp overlap

ChIP GM12878 ENCFF039QRE 151 bp overlap

EVX1 1 dataset

Motif DE_12h DE_12h-EVX1_MA0887.2 6 bp overlap

EVX2 1 dataset

Motif DE_12h DE_12h-EVX2_MA0888.2 6 bp overlap

FERD3L 1 dataset

Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap

FOXA1 1 dataset

ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 160 bp overlap

GATA1::TAL1 1 dataset

Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap

GATA2 1 dataset

ChIP TF1 GSE73207.GATA2.TF1 160 bp overlap

GATA4 4 datasets

ChIP G296S GSE85628.GATA4.G296S 142 bp overlap

ChIP G296S_2 GSE85628.GATA4.G296S_2 142 bp overlap

ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 160 bp overlap

ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 98 bp overlap

GATA6 1 dataset

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 160 bp overlap

GATAD2B 1 dataset

ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 160 bp overlap

GSX1 1 dataset

Motif DE_12h DE_12h-GSX1_MA0892.2 6 bp overlap

GSX2 1 dataset

Motif DE_12h DE_12h-GSX2_MA0893.3 7 bp overlap

HOXA1 1 dataset

Motif DE_12h DE_12h-HOXA1_MA1495.2 6 bp overlap

HOXA2 1 dataset

Motif DE_12h DE_12h-HOXA2_MA0900.3 6 bp overlap

HOXA3 1 dataset

Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap

HOXA6 1 dataset

Motif DE_12h DE_12h-HOXA6_MA1497.2 7 bp overlap

HOXB1 1 dataset

Motif DE_12h DE_12h-HOXB1_MA2093.1 7 bp overlap

HOXB2 1 dataset

Motif DE_12h DE_12h-HOXB2_MA0902.3 6 bp overlap

HOXB3 1 dataset

Motif DE_12h DE_12h-HOXB3_MA0903.2 6 bp overlap

HOXB5 1 dataset

Motif DE_12h DE_12h-HOXB5_MA0904.3 6 bp overlap

HOXB6 1 dataset

Motif DE_12h DE_12h-HOXB6_MA1500.2 7 bp overlap

HOXB7 1 dataset

Motif DE_12h DE_12h-HOXB7_MA1501.2 7 bp overlap

HOXB8 1 dataset

Motif DE_12h DE_12h-HOXB8_MA1502.2 7 bp overlap

HOXC8 1 dataset

Motif DE_12h DE_12h-HOXC8_MA1505.2 6 bp overlap

HOXD8 1 dataset

Motif DE_12h DE_12h-HOXD8_MA0910.3 7 bp overlap

IKZF1 2 datasets

ChIP GM12878 ENCFF753XDO 138 bp overlap

ChIP GM12878 ENCFF824TGK 160 bp overlap

IKZF2 4 datasets

ChIP GM12878 ENCFF238LYK 160 bp overlap

ChIP GM12878 ENCFF918AID 160 bp overlap

ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 151 bp overlap

ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 131 bp overlap

IRF4 1 dataset

ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 160 bp overlap

ISX 1 dataset

Motif DE_12h DE_12h-ISX_MA0654.2 6 bp overlap

LHX5 1 dataset

Motif DE_12h DE_12h-LHX5_MA1519.2 7 bp overlap

Lhx1 1 dataset

Motif DE_12h DE_12h-Lhx1_MA1518.3 10 bp overlap

Lhx4 1 dataset

Motif DE_12h DE_12h-Lhx4_MA0704.2 6 bp overlap

Lhx8 1 dataset

Motif DE_12h DE_12h-Lhx8_MA0705.2 6 bp overlap

MEF2B 1 dataset

ChIP tonsil GSE110682.MEF2B.tonsil 160 bp overlap

MEOX1 1 dataset

Motif DE_12h DE_12h-MEOX1_MA0661.2 7 bp overlap

MEOX2 1 dataset

Motif DE_12h DE_12h-MEOX2_MA0706.2 7 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

MIXL1 1 dataset

Motif DE_12h DE_12h-MIXL1_MA0662.2 6 bp overlap

MNX1 1 dataset

Motif DE_12h DE_12h-MNX1_MA0707.3 6 bp overlap

MTA2 2 datasets

ChIP GM12878 ENCFF615CWQ 160 bp overlap

ChIP GM12878 ENCSR293QAR.MTA2.GM12878 160 bp overlap

MYOD1 1 dataset

ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 153 bp overlap

NANOG 5 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 160 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 147 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 160 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 160 bp overlap

ChIP hESC GSE18292.NANOG.hESC 93 bp overlap

NFIC 1 dataset

ChIP GM12878 ENCSR000BRN.NFIC.GM12878 115 bp overlap

NIPBL 1 dataset

ChIP GM12878 GSE93080.NIPBL.GM12878 145 bp overlap

NKX6-2 1 dataset

Motif DE_12h DE_12h-NKX6-2_MA0675.2 6 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PAX5 3 datasets

ChIP GM12878 ENCFF482PUW 100 bp overlap

ChIP GM12878 ENCSR000BHD.PAX5.GM12878 106 bp overlap

ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 81 bp overlap

PAX7 1 dataset

ChIP H9_DOX GSE98976.PAX7.H9_DOX 147 bp overlap

PDX1 1 dataset

Motif DE_12h DE_12h-PDX1_MA0132.3 6 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 160 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

POU5F1 4 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 160 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 160 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 160 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 106 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA0628.2 6 bp overlap

PRRX1 1 dataset

Motif DE_12h DE_12h-PRRX1_MA0716.2 6 bp overlap

RARA 1 dataset

ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 142 bp overlap

RAX2 1 dataset

Motif DE_12h DE_12h-RAX2_MA0717.2 6 bp overlap

RELB 1 dataset

ChIP GM12878 ENCSR387QUV.RELB.GM12878 160 bp overlap

SHOX 1 dataset

Motif DE_12h DE_12h-SHOX_MA0630.2 6 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 160 bp overlap

SPI1 19 datasets

ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 67 bp overlap

ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 74 bp overlap

ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 87 bp overlap

ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 79 bp overlap

ChIP EM-3 GSE128834.SPI1.EM-3 100 bp overlap

ChIP GM12878 ENCFF134LCP 87 bp overlap

ChIP GM12891 ENCFF563IUT 73 bp overlap

ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 128 bp overlap

ChIP HL-60 ENCFF645GBT 108 bp overlap

ChIP K-562 ENCSR000BGW.SPI1.K-562 110 bp overlap

ChIP K-562 GSE70482.SPI1.K-562 102 bp overlap

ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 59 bp overlap

ChIP K562 ENCFF410ORC 93 bp overlap

ChIP NB4 GSE128834.SPI1.NB4 131 bp overlap

ChIP OCI-Ly10 GSE56857.SPI1.OCI-Ly10 106 bp overlap

ChIP OCI-Ly3 GSE56857.SPI1.OCI-Ly3 83 bp overlap

ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 101 bp overlap

ChIP primary-B-cell_donorA GSE128834.SPI1.primary-B-cell_donorA 72 bp overlap

ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 53 bp overlap

SPIB 2 datasets

ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 160 bp overlap

ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 124 bp overlap

STAT1 1 dataset

ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 61 bp overlap

STAT3 3 datasets

ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 144 bp overlap

ChIP TMD8 GSE106844.STAT3.TMD8 160 bp overlap

ChIP TMD8_DMSO GSE123398.STAT3.TMD8_DMSO 160 bp overlap

Shox2 1 dataset

Motif DE_12h DE_12h-Shox2_MA0720.2 6 bp overlap

TARDBP 1 dataset

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 124 bp overlap

TBX5 6 datasets

ChIP G296S GSE85628.TBX5.G296S 160 bp overlap

ChIP G296S_2 GSE85628.TBX5.G296S_2 160 bp overlap

ChIP G296S_4 GSE85628.TBX5.G296S_4 160 bp overlap

ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 160 bp overlap

ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 160 bp overlap

ChIP hiPSC GSE81585.TBX5.hiPSC 160 bp overlap

TCF7 1 dataset

ChIP GM12878 ENCFF749DPM 117 bp overlap

TEAD4 2 datasets

ChIP HEK293_siCtrl GSE130135.TEAD4.HEK293_siCtrl 123 bp overlap

ChIP HEK293_siE1A GSE130135.TEAD4.HEK293_siE1A 160 bp overlap

TFAP4 1 dataset

Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap

TLX2 1 dataset

Motif DE_12h DE_12h-TLX2_MA1577.2 6 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

UNCX 1 dataset

Motif DE_12h DE_12h-UNCX_MA0721.2 6 bp overlap

VAX2 1 dataset

Motif DE_12h DE_12h-VAX2_MA0723.3 6 bp overlap

YY1 6 datasets

ChIP GM12878 ENCFF150EFU 160 bp overlap

ChIP GM12878 ENCFF908JTL 160 bp overlap

ChIP GM12891 ENCFF460SIS 160 bp overlap

ChIP GM12891 ENCSR000BKJ.YY1.GM12891 142 bp overlap

ChIP GM12892 ENCSR000BLT.YY1.GM12892 160 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 160 bp overlap

ZBTB44 1 dataset

ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 105 bp overlap

ZFP42 1 dataset

Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap

ZNF217 1 dataset

ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 160 bp overlap

ZNF766 1 dataset

Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap

mix-a 1 dataset

Motif DE_12h DE_12h-mix-a_MA0621.2 7 bp overlap