chr12 : 89,907,726 89,908,047
321 bp 79 TFs 0 linked genes
This 321 bp open chromatin element has no linked target genes and is bound by 79 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:89,902,726 – 89,913,047
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
BCL11B 2 datasets
ChIP HEK293 ENCFF859UHP 321 bp overlap
ChIP HEK293 ENCSR770PQN.BCL11B.HEK293 294 bp overlap
BRD4 2 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 149 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 109 bp overlap
CDK8 1 dataset
ChIP myometrium_PT848 GSE128230.CDK8.myometrium_PT848 78 bp overlap
CDX2 1 dataset
ChIP intestinal-cell GSE115314.CDX2.intestinal-cell 257 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 250 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 167 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 321 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 321 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 258 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 321 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 255 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 272 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 187 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 321 bp overlap
ChIP DE DE-FOXA2-1 321 bp overlap
ChIP DE DE-FOXA2-2 321 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 193 bp overlap
GATA2 9 datasets
ChIP ESF GSE108408.GATA2.ESF 211 bp overlap
ChIP SK-N-SH ENCFF764OZD 311 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 195 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 186 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 247 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 184 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 252 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 291 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 310 bp overlap
GATA3 8 datasets
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 272 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 239 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 321 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 199 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 321 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 225 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 321 bp overlap
ChIP SK-N-SH ENCFF040SSB 301 bp overlap
GATA4 7 datasets
ChIP DE DE-GATA4-1 321 bp overlap
ChIP DE DE-GATA4-2 321 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 321 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 266 bp overlap
ChIP foregut GSE117136.GATA4.foregut 321 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 321 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 303 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 321 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 121 bp overlap
ChIP DE DE-GATA6-1 321 bp overlap
ChIP DE DE-GATA6-2 321 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 321 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 321 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 321 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 321 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 321 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 321 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 247 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 294 bp overlap
ChIP foregut GSE117136.GATA6.foregut 321 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 321 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 305 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 306 bp overlap
GLI2 1 dataset
ChIP HEK293 ENCFF700EUN 304 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 321 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 206 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 321 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 321 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 321 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 321 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 321 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 321 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 321 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 221 bp overlap
KLF16 1 dataset
ChIP HEK293 ENCSR397DQC.KLF16.HEK293 321 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 232 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 241 bp overlap
KLF9 2 datasets
ChIP HEK293 ENCFF588INF 321 bp overlap
ChIP HEK293 ENCSR076EZB.KLF9.HEK293 278 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 85 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 124 bp overlap
ChIP myometrium_PT967 GSE128230.MED12.myometrium_PT967 115 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 193 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 289 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 305 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 272 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 122 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 321 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 321 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 237 bp overlap
OVOL3 2 datasets
ChIP HEK293 ENCFF898STB 292 bp overlap
ChIP HEK293 ENCSR768LIO.OVOL3.HEK293 272 bp overlap
PDX1 2 datasets
ChIP hESC GSE58685.PDX1.hESC 139 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 321 bp overlap
PGR 1 dataset
ChIP leiomyoma_RU486 GSE40724.PGR.leiomyoma_RU486 135 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 156 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 321 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 315 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 278 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 177 bp overlap
PRDM4 3 datasets
ChIP HEK293 ENCFF069PHD 297 bp overlap
ChIP HEK293 ENCFF069PHD 209 bp overlap
ChIP HEK293 ENCSR443MVV.PRDM4.HEK293 321 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 321 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 321 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 321 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 240 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 274 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 312 bp overlap
SCRT1 3 datasets
ChIP HEK293 ENCFF513YVP 321 bp overlap
ChIP HEK293 ENCFF513YVP 167 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 321 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 274 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 163 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 249 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 315 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 214 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 304 bp overlap
SPI1 1 dataset
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 81 bp overlap
TAL1 1 dataset
ChIP ProEs GSE59087.TAL1.ProEs 158 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 286 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 252 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 261 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 140 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 321 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 192 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 192 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 257 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 265 bp overlap
TSHZ1 2 datasets
ChIP HEK293 ENCFF893BGV 306 bp overlap
ChIP HEK293 ENCSR217WRC.TSHZ1.HEK293 304 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 263 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 200 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 320 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 321 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 321 bp overlap
ZNF18 1 dataset
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 321 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 321 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 272 bp overlap
ZNF34 1 dataset
ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 240 bp overlap
ZNF341 2 datasets
ChIP HEK293 ENCFF944VMC 321 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 281 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 271 bp overlap
ZNF501 2 datasets
ChIP HEK293 ENCFF066RAQ 321 bp overlap
ChIP HEK293 ENCFF066RAQ 216 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 224 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 288 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 284 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 253 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 207 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 302 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 321 bp overlap
ZSCAN5C 2 datasets
ChIP HEK293 ENCFF343DTU 137 bp overlap
ChIP HEK293 ENCSR731AGO.ZSCAN5C.HEK293 321 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 288 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 321 bp overlap