chr1:212,907,964–212,908,918

chr1 : 212,907,964 – 212,908,918

954 bp 62 TFs 9 linked genes

This 954 bp open chromatin element is linked to 9 target genes and is bound by 62 transcription factors.

Linked Genes

9 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000282718		7.9 kb	Proximal	Proximity
VASH2		42.2 kb	Distal	Multiome
FLVCR1		50.1 kb	Distal	Multiome
FLVCR1-DT		50.3 kb	Distal	Multiome
ANGEL2		107.1 kb	Distal	Multiome
TATDN3		116.5 kb	Distal	Multiome
NSL1		116.6 kb	Distal	Multiome
RPS6KC1		142.8 kb	Distal	Multiome
ATF3		299.7 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

62 transcription factors

ChIP WTC11 ENCFF267GQJ 317 bp overlap

ChIP WTC11 ENCFF267GQJ 317 bp overlap

ARID4B 1 dataset

ChIP WTC11 ENCFF441HDK 457 bp overlap

ASH2L 2 datasets

ChIP H1 ENCFF399KAM 774 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 274 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 350 bp overlap

BCL11A 1 dataset

Motif DE_24h DE_24h-BCL11A_MA2324.1 7 bp overlap

BRD3 2 datasets

ChIP H-1_DE GSE126661.BRD3.H-1_DE 273 bp overlap

ChIP H-1_DE GSE126661.BRD3.H-1_DE 91 bp overlap

ChIP HAP1 GSE108387.BRD4.HAP1 299 bp overlap

CEBPB 1 dataset

ChIP K562 ENCFF584CTB 354 bp overlap

CHD1 2 datasets

ChIP WA01 ENCSR000AQK.CHD1.WA01 253 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 63 bp overlap

CREB1 2 datasets

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 152 bp overlap

ChIP WA01 ENCSR000BSN.CREB1.WA01 181 bp overlap

Cebpa 2 datasets

ChIP BLaER1 ENCFF093OYK 174 bp overlap

ChIP BLaER1 ENCFF364PUR 236 bp overlap

ChIP WTC11 ENCFF692RZJ 482 bp overlap

ChIP WTC11 ENCFF011YUL 281 bp overlap

ChIP WTC11 ENCFF011YUL 281 bp overlap

FEZF2 2 datasets

Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap

Motif DE_24h DE_24h-FEZF2_MA2341.1 8 bp overlap

FIGLA 2 datasets

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 351 bp overlap

ChIP DE DE-FOXA2-2 440 bp overlap

FOXK1 1 dataset

ChIP WTC11 ENCFF875IGU 391 bp overlap

Foxn1 2 datasets

Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap

Motif DE_24h DE_24h-Foxn1_MA1684.1 6 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 649 bp overlap

ChIP DE DE-GATA4-2 779 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 587 bp overlap

ChIP DE DE-GATA6-2 656 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 565 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 611 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 678 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 591 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 782 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 661 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000BNR.HDAC2.WA01 115 bp overlap

ChIP DE_D1 S08-DE-d1-JUN-exp1 545 bp overlap

ChIP DE_D1 S13-DE-d1-JUN-exp1 433 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 709 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 762 bp overlap

ChIP ESC S24-ESC-d0-JUN-exp1 827 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 323 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 360 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 333 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 388 bp overlap

MEIS1 1 dataset

Motif DE_24h DE_24h-MEIS1_MA0498.3 5 bp overlap

MORC2 1 dataset

ChIP H9 GSE95374.MORC2.H9 388 bp overlap

MPHOSPH8 1 dataset

ChIP H9 GSE95374.MPHOSPH8.H9 283 bp overlap

NANOG 9 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 127 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 954 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 393 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 287 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 502 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 354 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 395 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 193 bp overlap

NFATC4 1 dataset

ChIP WTC11 ENCFF744MZI 271 bp overlap

POLR2A 2 datasets

ChIP GM23338 ENCFF450WCS 235 bp overlap

ChIP H1 ENCFF833NJP 260 bp overlap

POU5F1 3 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 709 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 333 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 119 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 628 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 146 bp overlap

Motif DE_24h DE_24h-RORA_MA0072.2 11 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 210 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 707 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 395 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 453 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 443 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 445 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 535 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 500 bp overlap

SMAD3 1 dataset

ChIP BG03 GSE21614.SMAD3.BG03 145 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 259 bp overlap

SMARCC1 1 dataset

ChIP ESC S25-ESC-d0-BAF155-exp1 308 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 489 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 680 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 177 bp overlap

ChIP WTC11 ENCFF688PEU 501 bp overlap

ChIP WA01 ENCSR000BQV.SP4.WA01 321 bp overlap

SREBF1 2 datasets

Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap

Motif DE_24h DE_24h-SREBF1_MA0829.3 10 bp overlap

SREBF2 2 datasets

Motif DE_12h DE_12h-SREBF2_MA0828.3 10 bp overlap

Motif DE_24h DE_24h-SREBF2_MA0828.3 10 bp overlap

ChIP H1 ENCFF478SZO 485 bp overlap

ChIP WA01 ENCSR000BLU.TAF7.WA01 172 bp overlap

ChIP NPC GSE154479.TCF3.NPC 373 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 405 bp overlap

TEAD4 1 dataset

ChIP ESC S26-ESC-d0-TEAD4-exp1 693 bp overlap

THRA 2 datasets

Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap

Motif DE_24h DE_24h-THRA_MA1969.2 18 bp overlap

ChIP H9 GSE142050.TP53.H9 304 bp overlap

ZEB1 2 datasets

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap

ZKSCAN1 1 dataset

Motif DE_24h DE_24h-ZKSCAN1_MA1585.2 9 bp overlap

ZNF135 1 dataset

Motif DE_24h DE_24h-ZNF135_MA1587.1 14 bp overlap

ZNF425 2 datasets

ChIP WTC11 ENCFF359IXT 301 bp overlap

ChIP WTC11 ENCFF359IXT 301 bp overlap

ZNF449 1 dataset

Motif DE_24h DE_24h-ZNF449_MA1656.2 10 bp overlap

ZNF454 1 dataset

Motif DE_24h DE_24h-ZNF454_MA1712.2 17 bp overlap

ZNF460 1 dataset

Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap

ZNF532 2 datasets

ChIP WTC11 ENCFF373VBX 285 bp overlap

ChIP WTC11 ENCFF373VBX 283 bp overlap

ZNF766 2 datasets

Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap

Motif DE_24h DE_24h-ZNF766_MA2098.1 9 bp overlap

ZNF784 2 datasets

Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap

Motif DE_24h DE_24h-ZNF784_MA1717.2 8 bp overlap

ZSCAN18 1 dataset

ChIP WTC11 ENCFF867QWX 257 bp overlap