chr12 : 71,006,988 71,007,416
428 bp 71 TFs 0 linked genes
This 428 bp open chromatin element has no linked target genes and is bound by 71 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:71,001,988 – 71,012,416
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
ATRX 3 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 428 bp overlap
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 412 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 428 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 415 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 428 bp overlap
BRD4 8 datasets
ChIP BE2C GSE80151.BRD4.BE2C 428 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 343 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 396 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 427 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 428 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 428 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 428 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 428 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 416 bp overlap
CHD4 1 dataset
ChIP macrophage GSE136216.CHD4.macrophage 202 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 337 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 424 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 249 bp overlap
CSRNP3 1 dataset
ChIP SK-N-SH ENCFF710BXD 300 bp overlap
CTCFL 2 datasets
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 141 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCFL.Kelly_resistant_JQ1 404 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 175 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 285 bp overlap
EP300 4 datasets
ChIP SK-N-SH ENCFF451CNG 379 bp overlap
ChIP SK-N-SH ENCFF829RWA 423 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 428 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 407 bp overlap
ERG 1 dataset
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 275 bp overlap
ESRRG 2 datasets
ChIP SK-N-SH ENCFF394HLU 285 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR023KKB.ESRRG.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 254 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 315 bp overlap
EVI1 1 dataset
ChIP SKH1_10d GSE87283.EVI1.SKH1_10d 222 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 64 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 270 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 103 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 428 bp overlap
ChIP SK-N-SH ENCFF764OZD 177 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 423 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 179 bp overlap
GATA3 9 datasets
ChIP BE2C GSE65664.GATA3.BE2C 402 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 428 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 428 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 406 bp overlap
ChIP SH-SY5Y ENCFF475HYF 414 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 428 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 414 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 428 bp overlap
ChIP SK-N-SH ENCFF040SSB 346 bp overlap
GATA6 7 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 428 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 428 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 419 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 428 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 428 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 428 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 415 bp overlap
GLIS3 2 datasets
ChIP SK-N-SH ENCFF370MHZ 285 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 324 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 428 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 428 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 428 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 428 bp overlap
ChIP SK-N-SH ENCFF285GEQ 419 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 398 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 163 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 398 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 219 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 287 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 428 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 428 bp overlap
MYB 1 dataset
ChIP Loucy GSE94000.MYB.Loucy 345 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 212 bp overlap
MYCN 7 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 428 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 428 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 242 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 428 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 428 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 344 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 284 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 357 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 282 bp overlap
PATZ1 2 datasets
ChIP SK-N-SH ENCFF650NCN 335 bp overlap
ChIP SK-N-SH ENCFF650NCN 256 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 317 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 428 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 428 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 428 bp overlap
POLR2A 1 dataset
ChIP SK-N-SH ENCFF683PFH 372 bp overlap
PPARA 2 datasets
ChIP SK-N-SH ENCFF446HWC 261 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR602QEJ.PPARA.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 180 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 428 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 326 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 104 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 428 bp overlap
RFX5 1 dataset
ChIP SK-N-SH ENCFF755HLO 341 bp overlap
RUNX1 1 dataset
ChIP SKH1_RUNX1-EVI1_KD GSE87283.RUNX1.SKH1_RUNX1-EVI1_KD 151 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.RUNX1T1.Kasumi-1_CEBPA-ER 236 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 306 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 428 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 268 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 413 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 428 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 428 bp overlap
SMARCA4 8 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 395 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 310 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 156 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 319 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 428 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 400 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 376 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 428 bp overlap
SMC1A-B 1 dataset
ChIP Kelly_shLUC-res GSE115248.SMC1A-B.Kelly_shLUC-res 330 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 337 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 394 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 262 bp overlap
SPI1 11 datasets
ChIP BDMC_donorG GSE128834.SPI1.BDMC_donorG 133 bp overlap
ChIP BDMC_donorH GSE128834.SPI1.BDMC_donorH 109 bp overlap
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 145 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 338 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 248 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 321 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 207 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 178 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 175 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 197 bp overlap
ChIP Kasumi-1_SIRUNX1ETO GSE60130.SPI1.Kasumi-1_SIRUNX1ETO 256 bp overlap
STAT3 1 dataset
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 280 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 262 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 164 bp overlap
TAL1 1 dataset
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 271 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 428 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 428 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 237 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 181 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 417 bp overlap
ChIP SK-N-SH ENCFF270OWF 428 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 428 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 428 bp overlap
ChIP SK-N-SH ENCFF754TJT 401 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 407 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 421 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 297 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 376 bp overlap
TSHZ2 3 datasets
ChIP SK-N-SH ENCFF182EBB 116 bp overlap
ChIP SK-N-SH ENCFF182EBB 268 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 428 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 390 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 390 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 354 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 285 bp overlap
ZFP30 1 dataset
ChIP SK-N-SH ENCFF375XBD 291 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 317 bp overlap
ZNF8 1 dataset
ChIP SK-N-SH ENCFF131SMT 331 bp overlap