chr12 : 62,106,449 – 62,107,030
581 bp 110 TFs 1 linked gene
This 581 bp open chromatin element is linked to TAFA2 and is bound by 110 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TAFA2 1.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:62,101,449 – 62,112,030
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
110 transcription factors
Source
Cell type
ASCL1 2 datasets
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
Motif ES_0h ES_0h-ASCL1_MA1100.3 8 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 283 bp overlap
Arid3a 4 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Motif ES_0h ES_0h-Arid3a_MA0151.1 6 bp overlap
Ascl2 2 datasets
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Motif ES_0h ES_0h-Ascl2_MA0816.1 10 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 256 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD2 1 dataset
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 307 bp overlap
Bhlha15 2 datasets
Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap
Motif ES_0h ES_0h-Bhlha15_MA1472.3 8 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 167 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 246 bp overlap
CDX1 1 dataset
Motif DE_12h DE_12h-CDX1_MA0878.3 10 bp overlap
CEBPA 1 dataset
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 224 bp overlap
CEBPB 1 dataset
ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 153 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 551 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 248 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 513 bp overlap
CREBBP 2 datasets
ChIP monocyte_IFNg GSE131294.CREBBP.monocyte_IFNg 160 bp overlap
ChIP monocyte_IFNg-LPS GSE131294.CREBBP.monocyte_IFNg-LPS 140 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ERF::FOXI1 1 dataset
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 245 bp overlap
ESR2 1 dataset
Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 351 bp overlap
ChIP DE DE-FOXA2-2 383 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 284 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 3 datasets
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
Motif ES_0h ES_0h-FOXC2_MA0846.2 11 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 242 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
Foxq1 2 datasets
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 265 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 389 bp overlap
HNF1A 2 datasets
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
Motif ES_0h ES_0h-HNF1A_MA0046.3 13 bp overlap
HOXC12 1 dataset
Motif DE_12h DE_12h-HOXC12_MA0906.2 10 bp overlap
HOXC13 1 dataset
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 290 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 270 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 501 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 358 bp overlap
KLF4 1 dataset
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MAFF 2 datasets
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
Motif ES_0h ES_0h-MAFF_MA0495.4 11 bp overlap
MEF2A 2 datasets
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
Motif ES_0h ES_0h-MEF2A_MA0052.5 10 bp overlap
MEF2C 2 datasets
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
Motif ES_0h ES_0h-MEF2C_MA0497.2 11 bp overlap
MEIS1 5 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MSC 4 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
Motif ES_0h ES_0h-MSC_MA0665.1 10 bp overlap
MYF5 2 datasets
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
Motif ES_0h ES_0h-MYF5_MA1641.2 8 bp overlap
MYOD1 2 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
Motif ES_0h ES_0h-MYOD1_MA0499.3 9 bp overlap
MYOG 2 datasets
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Motif ES_0h ES_0h-MYOG_MA0500.3 8 bp overlap
Mafb 2 datasets
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 172 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 550 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 322 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 581 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 500 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 435 bp overlap
ChIP hESC GSE18292.NANOG.hESC 229 bp overlap
ChIP hESC GSE20650.NANOG.hESC 196 bp overlap
NR1I3 2 datasets
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
Motif ES_0h ES_0h-NR1I3_MA1534.2 8 bp overlap
NRL 2 datasets
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Motif ES_0h ES_0h-NRL_MA0842.3 12 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nr2e1 2 datasets
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
Motif ES_0h ES_0h-Nr2e1_MA0676.1 9 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PBX1 1 dataset
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
PKNOX2 3 datasets
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
Motif ES_0h ES_0h-PKNOX2_MA0783.1 12 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU5F1 9 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 581 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 430 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 581 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 260 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 207 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 559 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 215 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
PPARA::RXRA 2 datasets
Motif DE_12h DE_12h-PPARARXRA_MA1148.2 17 bp overlap
Motif ES_0h ES_0h-PPARARXRA_MA1148.2 17 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1619.2 8 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 274 bp overlap
RNF2 2 datasets
ChIP WA09 GSE105028.RNF2.WA09 487 bp overlap
ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 285 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 550 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 567 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 556 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 437 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 351 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 459 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 473 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 581 bp overlap
ChIP hESC GSE18292.SOX2.hESC 142 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 285 bp overlap
SPI1 6 datasets
ChIP DC_96h_donorM GSE128834.SPI1.DC_96h_donorM 223 bp overlap
ChIP DC_LPS GSE123347.SPI1.DC_LPS 95 bp overlap
ChIP macrophage_D7_donorP GSE128834.SPI1.macrophage_D7_donorP 132 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 142 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 127 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 185 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT1 2 datasets
ChIP CD14_INFG GSE43036.STAT1.CD14_INFG 128 bp overlap
ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 125 bp overlap
STAT1::STAT2 2 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
STAT3 3 datasets
ChIP monocyte_IFNg-LPS GSE120943.STAT3.monocyte_IFNg-LPS 208 bp overlap
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 328 bp overlap
ChIP monocyte_LPS GSE120943.STAT3.monocyte_LPS 180 bp overlap
Spi1 1 dataset
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Spz1 2 datasets
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
Motif DE_12h DE_12h-Spz1_MA0111.1 11 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 237 bp overlap
TBX19 2 datasets
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
Motif ES_0h ES_0h-TBX19_MA0804.2 17 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 127 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 477 bp overlap
TGIF1 1 dataset
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
TGIF2 3 datasets
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
Motif ES_0h ES_0h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 441 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Tcf21 2 datasets
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
Motif ES_0h ES_0h-Tcf21_MA0832.2 10 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
ZBTB32 1 dataset
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF354A 3 datasets
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
Motif ES_0h ES_0h-ZNF354A_MA1978.2 20 bp overlap
ZNF528 2 datasets
Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap
Motif ES_0h ES_0h-ZNF528_MA1597.1 17 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF652 2 datasets
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
ZSCAN16 2 datasets
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
Motif ES_0h ES_0h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN29 2 datasets
Motif DE_12h DE_12h-ZSCAN29_MA1602.2 11 bp overlap
Motif ES_0h ES_0h-ZSCAN29_MA1602.2 11 bp overlap
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