chr12 : 22,692,986 – 22,693,281
295 bp 62 TFs 1 linked gene
This 295 bp open chromatin element is linked to LINC02955 and is bound by 62 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02955 6.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:22,687,986 – 22,698,281
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
AGO1 4 datasets
ChIP K-562 ENCSR641BSL.AGO1.K-562 295 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 295 bp overlap
ChIP K562 ENCFF025NLP 236 bp overlap
ChIP K562 ENCFF741BCI 131 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF252VFI 295 bp overlap
ChIP HepG2 ENCFF773YDL 295 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 237 bp overlap
BCL3 1 dataset
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 250 bp overlap
BRD4 5 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 60 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 219 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 194 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 188 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 52 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 277 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 134 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 272 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_5 GSE62428.CHD8.T-47D_ETOH_5 160 bp overlap
CTCF 1 dataset
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 209 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 56 bp overlap
ELF1 1 dataset
ChIP ME-1 GSE46044.ELF1.ME-1 66 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 258 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 191 bp overlap
ESR1 4 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 295 bp overlap
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 135 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 185 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 203 bp overlap
FLI1 2 datasets
ChIP UAE GSE23730.FLI1.UAE 89 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 78 bp overlap
FOSL2 1 dataset
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 250 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 178 bp overlap
FOXO3 1 dataset
ChIP Hep-G2 GSE97661.FOXO3.Hep-G2 111 bp overlap
FOXP1 1 dataset
ChIP WTC11 ENCFF338WGC 224 bp overlap
HCFC1R1 1 dataset
ChIP cartilage GSE100311.HCFC1R1.cartilage 295 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 295 bp overlap
HNRNPK 2 datasets
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 167 bp overlap
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 135 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 295 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 295 bp overlap
JUND 2 datasets
ChIP A-549 ENCSR000BRF.JUND.A-549 106 bp overlap
ChIP Hep-G2 ENCSR000BGK.JUND.Hep-G2 102 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 116 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 132 bp overlap
MAF 1 dataset
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 234 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 210 bp overlap
MNX1 1 dataset
ChIP Hep-G2 ENCSR108MKR.MNX1.Hep-G2 152 bp overlap
MPHOSPH8 1 dataset
ChIP H9 GSE95374.MPHOSPH8.H9 295 bp overlap
MYC 1 dataset
ChIP CD34 GSE85488.MYC.CD34 295 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 113 bp overlap
NFATC1 1 dataset
ChIP GM12878 ENCSR000BQL.NFATC1.GM12878 144 bp overlap
NFYB 1 dataset
ChIP GM12878 ENCFF474DNH 71 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 163 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 168 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 156 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 295 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 295 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 102 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 285 bp overlap
POLR2A 6 datasets
ChIP GM12878 ENCFF631ERR 50 bp overlap
ChIP GM18951 ENCFF079KKO 166 bp overlap
ChIP K562 ENCFF214YGX 286 bp overlap
ChIP spleen ENCFF446ZGT 230 bp overlap
ChIP spleen ENCFF446ZGT 191 bp overlap
ChIP spleen ENCFF706IUS 295 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 295 bp overlap
ChIP K562 ENCFF648YPL 295 bp overlap
POU5F1 3 datasets
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 147 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 247 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 295 bp overlap
RARA 1 dataset
ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 133 bp overlap
RBM22 2 datasets
ChIP K-562 GSE120104.RBM22.K-562 295 bp overlap
ChIP K-562 ENCSR848AOP.RBM22.K-562 295 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 295 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 295 bp overlap
RUNX1 2 datasets
ChIP ME-1 GSE46044.RUNX1.ME-1 93 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 275 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 190 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 295 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 295 bp overlap
SRSF4 1 dataset
ChIP K-562 GSE120104.SRSF4.K-562 139 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 295 bp overlap
SUPT16H 1 dataset
ChIP hiF-T GSE98758.SUPT16H.hiF-T 261 bp overlap
SUPT5H 5 datasets
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 282 bp overlap
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 175 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 238 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 187 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 128 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 220 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 220 bp overlap
TCF12 1 dataset
ChIP ME-1 GSE46044.TCF12.ME-1 74 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 295 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 157 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 254 bp overlap
TRIM28 4 datasets
ChIP AF22 GSE84259.TRIM28.AF22 235 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 198 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 156 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 248 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 295 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 205 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 295 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 295 bp overlap
ZNF202 1 dataset
ChIP HEK293 ENCSR996FYT.ZNF202.HEK293 212 bp overlap
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