chr12 : 12,676,441 – 12,677,097
656 bp 70 TFs 1 linked gene
This 656 bp open chromatin element is linked to GPR19 and is bound by 70 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GPR19 7.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:12,671,441 – 12,682,097
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ASH2L 2 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 397 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 656 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 395 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 215 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 262 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 311 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 326 bp overlap
BRD4 3 datasets
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 423 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 223 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 322 bp overlap
CDK9 2 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 314 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 161 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 331 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 123 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 595 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 249 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 150 bp overlap
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 245 bp overlap
CTCF 1 dataset
ChIP right atrium auricular region ENCFF690LBT 265 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 272 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 311 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 194 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 656 bp overlap
ChIP DE DE-FOXA2-2 656 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 102 bp overlap
GATA3 1 dataset
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 55 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 628 bp overlap
ChIP DE DE-GATA4-2 650 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 656 bp overlap
ChIP DE DE-GATA6-2 619 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 556 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 291 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 440 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 647 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 588 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 133 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 65 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF353UJQ 612 bp overlap
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 270 bp overlap
HSF1 1 dataset
ChIP WA09_heat-shock GSE105028.HSF1.WA09_heat-shock 441 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 64 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 332 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 370 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 377 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 249 bp overlap
MED1 3 datasets
ChIP HCT-116 GSE121798.MED1.HCT-116 255 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 153 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 633 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYF6 1 dataset
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 285 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 641 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 531 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 250 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 656 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 650 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 592 bp overlap
ChIP hESC GSE18292.NANOG.hESC 311 bp overlap
ChIP hESC GSE20650.NANOG.hESC 286 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 125 bp overlap
NIPBL 2 datasets
ChIP WA09_heat-shock GSE105028.NIPBL.WA09_heat-shock 370 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 235 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 81 bp overlap
POU5F1 9 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 492 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 311 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 536 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 239 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 358 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 153 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 470 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 270 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 200 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 209 bp overlap
RELA 1 dataset
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.RELA.HeLa-B2_P65KD_TA_TNFA 100 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF896IJG 301 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 202 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 166 bp overlap
SMAD2-3 4 datasets
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 129 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 312 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 387 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 374 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 332 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 284 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 656 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 361 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 550 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 430 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 269 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 537 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 439 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 160 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 231 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 413 bp overlap
SOX2 5 datasets
ChIP HNSC GSE69479.SOX2.HNSC 231 bp overlap
ChIP hESC GSE69479.SOX2.hESC 197 bp overlap
ChIP hESC GSE18292.SOX2.hESC 182 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 561 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 391 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 201 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 384 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 260 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap
TAF1 2 datasets
ChIP Ishikawa ENCFF271ZVL 427 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 159 bp overlap
TCF12 2 datasets
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 347 bp overlap
TCF3 3 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 112 bp overlap
ChIP NPC GSE154479.TCF3.NPC 486 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 405 bp overlap
TEAD4 5 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 69 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 310 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 69 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 263 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 306 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 174 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 174 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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