chr12 : 5,480,189 – 5,480,764
575 bp 72 TFs 1 linked gene
This 575 bp open chromatin element is linked to ENSG00000256417 and is bound by 72 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000256417 190.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:5,475,189 – 5,485,764
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 138 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 196 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 536 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 495 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 414 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 317 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 301 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 131 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 453 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 525 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 554 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 512 bp overlap
BRD4 9 datasets
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 566 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 391 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 575 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 428 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 245 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 311 bp overlap
ChIP hESC GSE33281.BRD4.hESC 115 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 433 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 381 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 259 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 280 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 354 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 401 bp overlap
CTCF 3 datasets
ChIP RH4 GSE83726.CTCF.RH4 194 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap
ChIP endodermal cell ENCFF471YCZ 75 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 272 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 342 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 125 bp overlap
EZH2 11 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 575 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 524 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 493 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 356 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 201 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 575 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 544 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 328 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 462 bp overlap
ChIP neural progenitor cell ENCFF018MKA 355 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 346 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 209 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 314 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 479 bp overlap
ChIP DE DE-FOXA2-2 503 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 296 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 275 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 268 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 266 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 575 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 204 bp overlap
HDAC2 4 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 236 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 309 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 273 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 231 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 575 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 286 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 364 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 201 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 363 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 451 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 224 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 271 bp overlap
MAX 3 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP H1 ENCFF914VQY 182 bp overlap
ChIP NCI-H128 GSE41105.MAX.NCI-H128 380 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 292 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 395 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 313 bp overlap
MYOD1 3 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 572 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 329 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 130 bp overlap
MYOG 3 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 206 bp overlap
ChIP RH4 GSE83726.MYOG.RH4 366 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 176 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 395 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 263 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 186 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.PAX3-FOXO1.Hs-352-Sk_PAX3-FOXO1-vector 206 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 233 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 506 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 269 bp overlap
ChIP H1 ENCFF770YBQ 289 bp overlap
POU5F1 3 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 238 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 344 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 430 bp overlap
RAD21 1 dataset
ChIP RH4 GSE83726.RAD21.RH4 454 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 480 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 398 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 148 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 420 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 575 bp overlap
RNF2 1 dataset
ChIP WA01 GSE104690.RNF2.WA01 229 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 193 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 213 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_WT-TGF GSE138496.SMAD2-3.HGrC1_WT-TGF 219 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 322 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 575 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 285 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 295 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 210 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 312 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 409 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 319 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 451 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 372 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 254 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 188 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 387 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 230 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 221 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 204 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF881NFR 575 bp overlap
ChIP H1 ENCFF881NFR 487 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 242 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 276 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 485 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 201 bp overlap
TBP 4 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 227 bp overlap
ChIP hESC GSE122298.TBP.hESC 174 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 126 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 176 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 364 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 331 bp overlap
ZNF263 1 dataset
ChIP HEK293T GSE78099.ZNF263.HEK293T 143 bp overlap
ZNF398 1 dataset
ChIP H9 GSE133630.ZNF398.H9 184 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 179 bp overlap
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