chr11 : 125,239,981 125,240,709
728 bp 103 TFs 4 linked genes
This 728 bp open chromatin element is linked to 4 target genes and is bound by 103 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
PKNOX2 75.6 kb Distal Multiome
TMEM218 128.7 kb Distal Multiome
CCDC15 286.1 kb Distal Multiome
FEZ1 352.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:125,234,981 – 125,245,709
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 637 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 367 bp overlap
Alx1 2 datasets
Motif DE_36h DE_36h-Alx1_MA0854.2 8 bp overlap
Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap
Alx4 2 datasets
Motif DE_36h DE_36h-Alx4_MA0853.2 12 bp overlap
Motif DE_48h DE_48h-Alx4_MA0853.2 12 bp overlap
Arid3a 1 dataset
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Arid3b 2 datasets
Motif DE_36h DE_36h-Arid3b_MA0601.2 7 bp overlap
Motif DE_48h DE_48h-Arid3b_MA0601.2 7 bp overlap
Arx 2 datasets
Motif DE_36h DE_36h-Arx_MA0874.2 10 bp overlap
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BARX1 2 datasets
Motif DE_36h DE_36h-BARX1_MA0875.2 6 bp overlap
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BARX2 2 datasets
Motif DE_36h DE_36h-BARX2_MA1471.2 9 bp overlap
Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap
BRD4 4 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 150 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 133 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 218 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 328 bp overlap
BSX 2 datasets
Motif DE_36h DE_36h-BSX_MA0876.2 6 bp overlap
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CBX7 1 dataset
ChIP hESC GSE133412.CBX7.hESC 336 bp overlap
CEBPA 2 datasets
ChIP T-47D_progesterone GSE132649.CEBPA.T-47D_progesterone 137 bp overlap
ChIP T-47D_siCtrl GSE132649.CEBPA.T-47D_siCtrl 197 bp overlap
CEBPB 5 datasets
ChIP H1 ENCFF871PTR 176 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 141 bp overlap
ChIP K562 ENCFF189VBN 189 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 247 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 213 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 302 bp overlap
ChIP BLaER1 ENCFF274GAT 262 bp overlap
ChIP BLaER1 ENCFF335XTP 419 bp overlap
ChIP BLaER1 ENCFF364PUR 251 bp overlap
DLX1 2 datasets
Motif DE_36h DE_36h-DLX1_MA0879.3 6 bp overlap
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 2 datasets
Motif DE_36h DE_36h-DLX6_MA0882.2 6 bp overlap
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Dlx3 2 datasets
Motif DE_36h DE_36h-Dlx3_MA0880.2 6 bp overlap
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 2 datasets
Motif DE_36h DE_36h-Dlx4_MA0881.2 6 bp overlap
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
ELK4 1 dataset
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 188 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
EZH2 5 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 337 bp overlap
ChIP HeLa-S3 ENCFF318LHU 558 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 421 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 90 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 258 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 390 bp overlap
ChIP DE DE-FOXA2-2 346 bp overlap
FOXG1 2 datasets
Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap
Motif DE_48h DE_48h-FOXG1_MA0613.1 8 bp overlap
FOXN3 2 datasets
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
Motif DE_48h DE_48h-FOXN3_MA1489.1 8 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 355 bp overlap
ChIP DE DE-GATA4-2 344 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 257 bp overlap
ChIP DE DE-GATA6-2 425 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 572 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 457 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 534 bp overlap
GBX2 2 datasets
Motif DE_36h DE_36h-GBX2_MA0890.2 6 bp overlap
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
HAND2 1 dataset
Motif DE_48h DE_48h-HAND2_MA1638.2 6 bp overlap
HESX1 2 datasets
Motif DE_36h DE_36h-HESX1_MA0894.2 6 bp overlap
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 203 bp overlap
HOXA7 2 datasets
Motif DE_36h DE_36h-HOXA7_MA1498.3 6 bp overlap
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
Hmx2 2 datasets
Motif DE_36h DE_36h-Hmx2_MA0897.2 15 bp overlap
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Hmx3 2 datasets
Motif DE_36h DE_36h-Hmx3_MA0898.2 9 bp overlap
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
Isl1 2 datasets
Motif DE_36h DE_36h-Isl1_MA1608.2 7 bp overlap
Motif DE_48h DE_48h-Isl1_MA1608.2 7 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 506 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 331 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 223 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 562 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 329 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF12 1 dataset
Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KLF5 1 dataset
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
LBX2 2 datasets
Motif DE_36h DE_36h-LBX2_MA0699.2 6 bp overlap
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 2 datasets
Motif DE_36h DE_36h-LHX2_MA0700.3 6 bp overlap
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MSX1 2 datasets
Motif DE_36h DE_36h-MSX1_MA0666.3 6 bp overlap
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 2 datasets
Motif DE_36h DE_36h-MSX2_MA0708.3 6 bp overlap
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
MYC 1 dataset
ChIP H1 ENCFF794ZJT 214 bp overlap
Msx3 2 datasets
Motif DE_36h DE_36h-Msx3_MA0709.2 6 bp overlap
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NANOG 6 datasets
ChIP GM23338 ENCFF065NZG 251 bp overlap
ChIP H1 ENCFF747ZPQ 210 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 440 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 130 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 222 bp overlap
ChIP hESC GSE18292.NANOG.hESC 99 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_48h DE_48h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NHLH2 1 dataset
Motif DE_48h DE_48h-NHLH2_MA1529.2 16 bp overlap
NKX2-2 1 dataset
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
NKX6-3 2 datasets
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
Nobox 2 datasets
Motif DE_36h DE_36h-Nobox_MA0125.2 6 bp overlap
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 223 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 240 bp overlap
POU5F1 10 datasets
ChIP BG03 GSE21614.POU5F1.BG03 234 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 556 bp overlap
ChIP GM23338 ENCFF333SNB 231 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 428 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 499 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 159 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 378 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 328 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 263 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 91 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 566 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 398 bp overlap
RAX 2 datasets
Motif DE_36h DE_36h-RAX_MA0718.2 6 bp overlap
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RFX2 2 datasets
Motif DE_36h DE_36h-RFX2_MA0600.3 14 bp overlap
Motif DE_48h DE_48h-RFX2_MA0600.3 14 bp overlap
RFX5 2 datasets
Motif DE_36h DE_36h-RFX5_MA0510.3 14 bp overlap
Motif DE_48h DE_48h-RFX5_MA0510.3 14 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 213 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 378 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 559 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 358 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 345 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 367 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 82 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 364 bp overlap
SMARCC1 2 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 91 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 233 bp overlap
SOX10 2 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 252 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 359 bp overlap
SOX21 2 datasets
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
SOX4 2 datasets
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SP2 1 dataset
Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SUZ12 2 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 419 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 234 bp overlap
Sox11 2 datasets
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Sox6 1 dataset
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Stat6 1 dataset
Motif DE_48h DE_48h-Stat6_MA0520.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 182 bp overlap
TWIST1 1 dataset
Motif DE_48h DE_48h-TWIST1_MA1123.3 8 bp overlap
VENTX 2 datasets
Motif DE_36h DE_36h-VENTX_MA0724.1 9 bp overlap
Motif DE_48h DE_48h-VENTX_MA0724.1 9 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 272 bp overlap
ZBTB11 1 dataset
Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap
ZBTB26 2 datasets
Motif DE_48h DE_48h-ZBTB26_MA1579.2 8 bp overlap
Motif DE_48h DE_48h-ZBTB26_MA1579.2 8 bp overlap
ZBTB7A 1 dataset
Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF416 1 dataset
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap
ZNF558 2 datasets
Motif DE_36h DE_36h-ZNF558_MA2335.1 29 bp overlap
Motif DE_48h DE_48h-ZNF558_MA2335.1 29 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZNF766 1 dataset
Motif DE_48h DE_48h-ZNF766_MA2098.1 9 bp overlap