chr10 : 100,787,902 100,788,519
617 bp 52 TFs 7 linked genes
This 617 bp open chromatin element is linked to 7 target genes and is bound by 52 transcription factors.
Linked Genes
7 genes
Gene Expression Dist. to TSS Distance Link type
SLF2 124.8 kb Distal Multiome
SEMA4G 181.3 kb Distal Multiome
MRPL43 199.3 kb Distal Multiome
LZTS2 208.9 kb Distal Multiome
HIF1AN 252.3 kb Distal Multiome
NDUFB8 258.3 kb Distal Multiome
SEC31B 268.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:100,782,902 – 100,793,519
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
52 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 336 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 565 bp overlap
BMPR1A 2 datasets
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 125 bp overlap
ChIP HUVEC-C GSE60156.BMPR1A.HUVEC-C 219 bp overlap
BRD4 3 datasets
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 595 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 207 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 203 bp overlap
CBX7 1 dataset
ChIP hESC GSE133412.CBX7.hESC 153 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 236 bp overlap
CTCF 26 datasets
ChIP BE2C ENCFF757SRF 317 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 316 bp overlap
ChIP GM23338 ENCFF531QOI 425 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 188 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 221 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 156 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.CTCF.Kelly_resistant_JQ1 170 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 276 bp overlap
ChIP Kelly_shLUC-res GSE115248.CTCF.Kelly_shLUC-res 131 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 230 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 154 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 237 bp overlap
ChIP SK-N-SH GSE76815.CTCF.SK-N-SH 185 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 170 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 92 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 125 bp overlap
ChIP endodermal cell ENCFF471YCZ 228 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 351 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 160 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 305 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 274 bp overlap
ChIP neuroblastoma GSE115862.CTCF.neuroblastoma 308 bp overlap
ChIP retina_Hu22 GSE137311.CTCF.retina_Hu22 271 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 170 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 63 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 226 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 463 bp overlap
ESR1 1 dataset
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 94 bp overlap
EZH2 12 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 78 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 254 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 448 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 290 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 217 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 351 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 312 bp overlap
ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 190 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 372 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 122 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 349 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 297 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 399 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 405 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 480 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 475 bp overlap
GATA3 1 dataset
ChIP Kelly GSE65664.GATA3.Kelly 452 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 540 bp overlap
ChIP DE DE-GATA4-2 610 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 511 bp overlap
ChIP DE DE-GATA6-2 542 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 560 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 551 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 518 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 470 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 602 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 562 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 420 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 573 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 287 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 371 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 112 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 221 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 240 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 259 bp overlap
JUN 3 datasets
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 103 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 236 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 254 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 260 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 132 bp overlap
MAZ 1 dataset
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 59 bp overlap
MYCN 5 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 285 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 532 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 168 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 408 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 203 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 383 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 377 bp overlap
ChIP hESC GSE18292.NANOG.hESC 97 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 487 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 263 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 434 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 460 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 617 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 177 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 88 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 279 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 531 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 414 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 271 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 335 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 241 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 501 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 582 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 284 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 591 bp overlap
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 617 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 208 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 259 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 381 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 431 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 220 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 491 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 316 bp overlap
TOP2A 1 dataset
ChIP KG-1_etoposide_VP16 GSE114048.TOP2A.KG-1_etoposide_VP16 90 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 298 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 420 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 409 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 409 bp overlap
YY1 3 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 167 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 192 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 252 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 215 bp overlap