chr9 : 117,747,445 – 117,748,116
671 bp 92 TFs 0 linked genes
This 671 bp open chromatin element has no linked target genes and is bound by 92 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:117,742,445 – 117,753,116
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AR 47 datasets
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 236 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 295 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 277 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 154 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 251 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 249 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 199 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 233 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 289 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 247 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 295 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 301 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 558 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 645 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 570 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 418 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 215 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 285 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 374 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 402 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 488 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 324 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 325 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 289 bp overlap
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 303 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.AR.primary-prostate-cancer_P2_DSG 424 bp overlap
ChIP prostate GSE65478.AR.prostate 260 bp overlap
ChIP prostate GSE56288.AR.prostate 441 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 228 bp overlap
ChIP prostate-cancer_PDX_78 GSE130408.AR.prostate-cancer_PDX_78 401 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 219 bp overlap
ChIP prostate_1239_T GSE130408.AR.prostate_1239_T 269 bp overlap
ChIP prostate_1592_T GSE130408.AR.prostate_1592_T 397 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 623 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 189 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 429 bp overlap
ChIP prostate_1853_T GSE130408.AR.prostate_1853_T 438 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 357 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 587 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 443 bp overlap
ChIP prostate_DHT GSE61838.AR.prostate_DHT 408 bp overlap
ChIP prostate_P13_T GSE130408.AR.prostate_P13_T 337 bp overlap
ChIP prostate_P1_T GSE130408.AR.prostate_P1_T 215 bp overlap
ChIP prostate_P25 GSE130408.AR.prostate_P25 321 bp overlap
ChIP prostate_P27_T GSE130408.AR.prostate_P27_T 432 bp overlap
ChIP prostate_P29_T GSE130408.AR.prostate_P29_T 208 bp overlap
ChIP prostate_P5_T GSE130408.AR.prostate_P5_T 348 bp overlap
ARRB1 1 dataset
ChIP prostate GSE55615.ARRB1.prostate 144 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 271 bp overlap
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 640 bp overlap
ATOH7 1 dataset
Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap
Alx1 1 dataset
Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BRD4 3 datasets
ChIP SW480 GSE110473.BRD4.SW480 671 bp overlap
ChIP SW480 GSE73319.BRD4.SW480 256 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 439 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CDK8 1 dataset
ChIP SW480 GSE53602.CDK8.SW480 239 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 244 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
CTNNB1 1 dataset
ChIP LS180 GSE31939.CTNNB1.LS180 115 bp overlap
DBP 1 dataset
Motif DE_12h DE_12h-DBP_MA0639.2 10 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
ERF::FIGLA 1 dataset
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
ERF::FOXI1 1 dataset
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::FOXO1 1 dataset
Motif DE_12h DE_12h-ERFFOXO1_MA1936.2 12 bp overlap
ERG 6 datasets
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 252 bp overlap
ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 168 bp overlap
ChIP VCaP_DHT GSE79128.ERG.VCaP_DHT 308 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 287 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 246 bp overlap
ChIP VCaP_SH1_DHT GSE79128.ERG.VCaP_SH1_DHT 339 bp overlap
ESR1 4 datasets
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 358 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_6 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_6 446 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 492 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 268 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV2::FOXI1 1 dataset
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
EZH2 1 dataset
ChIP A-1847 GSE95643.EZH2.A-1847 430 bp overlap
FLI1::DRGX 1 dataset
Motif DE_12h DE_12h-FLI1DRGX_MA1949.2 14 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
FOSB::JUN 1 dataset
Motif DE_12h DE_12h-FOSBJUN_MA1127.1 11 bp overlap
FOSL1::JUND 1 dataset
Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap
FOSL2::JUN 1 dataset
Motif DE_12h DE_12h-FOSL2JUN_MA1131.2 10 bp overlap
FOXA1 19 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 167 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 153 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 499 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 498 bp overlap
ChIP primary-prostate-cancer_P1_DSG GSE114737.FOXA1.primary-prostate-cancer_P1_DSG 376 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 396 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 485 bp overlap
ChIP prostate_2030 GSE130408.FOXA1.prostate_2030 232 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 338 bp overlap
ChIP prostate_2078 GSE130408.FOXA1.prostate_2078 224 bp overlap
ChIP prostate_2078_T GSE130408.FOXA1.prostate_2078_T 356 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 294 bp overlap
ChIP prostate_2483 GSE130408.FOXA1.prostate_2483 405 bp overlap
ChIP prostate_P1 GSE130408.FOXA1.prostate_P1 213 bp overlap
ChIP prostate_P13_T GSE130408.FOXA1.prostate_P13_T 233 bp overlap
ChIP prostate_P19 GSE130408.FOXA1.prostate_P19 206 bp overlap
ChIP prostate_P1_T GSE130408.FOXA1.prostate_P1_T 161 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 280 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 298 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
GABPA 2 datasets
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 201 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 238 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 165 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
HOXB13 23 datasets
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 65 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 72 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 121 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 106 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 100 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 498 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 391 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 327 bp overlap
ChIP prostate_2480 GSE130408.HOXB13.prostate_2480 397 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 211 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 248 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 467 bp overlap
ChIP prostate_P1 GSE130408.HOXB13.prostate_P1 227 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 308 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 575 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 378 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 245 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 356 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 534 bp overlap
ChIP prostate_P27 GSE130408.HOXB13.prostate_P27 371 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 561 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 526 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 351 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JUN 3 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 567 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 573 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
KMT2B-D 1 dataset
ChIP SW480 GSE115985.KMT2B-D.SW480 491 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MEIS1 2 datasets
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 256 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 474 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 123 bp overlap
NEUROG2 1 dataset
Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap
NR3C1 4 datasets
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 84 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 480 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 270 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 273 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PAX6 1 dataset
Motif DE_12h DE_12h-PAX6_MA0069.1 14 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
POLR2A 1 dataset
ChIP prostate gland ENCFF881OMH 283 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PROX1 2 datasets
ChIP SW480 GSE60390.PROX1.SW480 68 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 278 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RELA 1 dataset
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 306 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 324 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 270 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 281 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 396 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX2 3 datasets
ChIP LK2 GSE137459.SOX2.LK2 359 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 436 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 528 bp overlap
SPDEF 1 dataset
Motif DE_12h DE_12h-SPDEF_MA0686.2 10 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 233 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TP53 2 datasets
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 340 bp overlap
ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 445 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
ZNF682 1 dataset
Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap
ZNF692 1 dataset
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
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